RNA id: TCONS_00055129


Basic Information

Item Value
RNA id TCONS_00055129
length 600
RNA type mRNA
GC content 0.52
exon number 3
gene id XLOC_028384
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 905483 ~ 908821 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTGAATATTCAAACCGCAGCCAAGCCGGAGCTGATTACGAGTGGCATTATGAATATTACGAGGACGAGGAGCCCGTGTCTTTTGAGGGACTGAGAGCAAACCGCTaCTCTATCGTGATTGGCTTCTGGGTCGGCCTCGCCGTCTTCGTCATCTTCATGTTCTTTGTGTTAACTCTGCTGACCAAAACAGGAGCTCCACATCCAGAGATGTGTGATGCCAGCATGAAGCCtcatgttctgattggctgtgagCTGGAAGTGGGCGGGTCTCTGGCATTTTCTCTGCCACCGCTGCCTGACCAATCACGTTCCCTCTTTCACTTCTACATCCATAAGGAGGAGCGAGTAAAAACCCACAAAGACGCTGTGATTGGCCGAGGGATGCACTGTGGGCGGGGCAATGCTGAGAGAGCAGATGAAGATGAGCACTTCATGTCCAGCTTCAACATTCCGAATTTTGTGAACTCCGAGCAGAGCTCCAGCCTCGGCCATGACGACTTTCTGCTGAGTGAGCCGCCAATCATCACAGACGGCCAATCAGATGAGCTGAAGACAGCAGAGCCCGCCCATCTCTGCTATGATATCATCAGACATTGA

Function

GO:

id name namespace
GO:0006112 energy reserve metabolic process biological_process
GO:0042594 response to starvation biological_process
GO:0106071 positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0051641 cellular localization biological_process
GO:0097009 energy homeostasis biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031782 type 4 melanocortin receptor binding molecular_function
GO:0030545 receptor regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100729-5 Enables signaling receptor regulator activity and type 4 melanocortin receptor binding activity. Involved in energy homeostasis and energy reserve metabolic process. Acts upstream of or within cellular localization; positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway; and response to starvation. Located in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Is expressed in several structures, including adipose tissue; heart; liver; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in obesity. Orthologous to human MRAP2 (melanocortin 2 receptor accessory protein 2).

Ensembl:

ensembl_id ENSDART00000168266

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057977 lncRNA downstream 1461 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057976 lncRNA downstream 1495 899962 ~ 903988 (-) False XLOC_028383
TCONS_00055118 lncRNA downstream 133091 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055116 lncRNA downstream 135663 764396 ~ 769820 (-) False XLOC_028378
TCONS_00055117 lncRNA downstream 135852 769043 ~ 769631 (-) False XLOC_028378
TCONS_00057978 lncRNA upstream 10931 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057979 lncRNA upstream 102139 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 113495 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00057980 lncRNA upstream 120015 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057981 lncRNA upstream 145840 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00055128 mRNA downstream 15263 862048 ~ 890220 (-) True XLOC_028382
TCONS_00055127 mRNA downstream 25068 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055125 mRNA downstream 47049 823398 ~ 858434 (-) False XLOC_028381
TCONS_00055124 mRNA downstream 67664 818928 ~ 837819 (-) False XLOC_028381
TCONS_00055126 mRNA downstream 67715 823404 ~ 837768 (-) True XLOC_028381
TCONS_00055130 mRNA upstream 20736 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055132 mRNA upstream 49230 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055133 mRNA upstream 73207 982028 ~ 991043 (-) False XLOC_028388
TCONS_00055134 mRNA upstream 77139 985960 ~ 992148 (-) True XLOC_028388
TCONS_00055135 mRNA upstream 105727 1014548 ~ 1015896 (-) True XLOC_028390
TCONS_00055123 other downstream 97030 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 220064 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055131 other upstream 28408 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1151703 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1766285 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3583745 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3637388 4546209 ~ 4570805 (-) True XLOC_028452

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000068_00728788_00730622.mRNA True 839 mRNA 0.48 3 CI01000068 728558 ~ 730622 (-)