RNA id: TCONS_00055141


Basic Information

Item Value
RNA id TCONS_00055141
length 3771
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_028397
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1469106 ~ 1497384 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGGGATGTGTTACTTTTCACATTGCTTTTCAAAACGAGCCATTCGCCGTGGTTTAAAATGCAGCTGttttgtagaaaataatataaacatttctcattaacttccggccacagctgtatcccttctagcaacaaacATGACCTGAGCATGTGCGCTTGCGCGTGCTCGTCATGGTGGCTGCGGGTTTTGCGCACAGGGACGCGACGCTGCAGCCTCGGAGGGACCCATAGCAACGGCGGATAAACATGAGTTACTACAGCAGACCCTCCAGTTCTTCCAGCTTCGCGTCCACAGTCATGACCAGCTCACTGGAGGACGACAGCCTGAACCTCAGGCAGCAGAAACTGGAGAAACAGAGGGCTCTGCTGGAGCAGAAGCAGCGGCGGAAGCGTCAGGAGCTTCTGATGGTTCAGCCAAACCCTGATGGCCGACCGAGACGCTCACGGCCCAGACGCAGCGAAGAGCAGGCGCCTCTGGTGGAGACCAACATCAGCACCGCCAGTGACATCATACTCGACGGCATTGATGGACCTGCAGCACTGCTGGGTTCAGAAGCTCCTGATCTGGGCAGTAAGATCCAGGTTTTGTCGGTCAGTCAAACACCACAGCAGCCGTCACCGCCTGTGACAGAAGAGCCAGAGACAGATGCTGACACCGACACACTGCTGGAGCCCAAAACTGACATACACACACTGCTGCAGAGACGCGGTCTGTCTGGCAGCATGAACTATGATGAAGCCAGTGAggatgaggatgaagatgatgaataCGAAGCTGAAGAGCGAAGCCGGTCTCTGTCCCCGAACACCGAGAGCACTCGGCCGGCGTCTGCATCCAGCACTAAATCCACTACAGAGTGCATCCCGGTGGGCTCTCCATCAGCTGAGGGCTCCTCCATTGAGGTGGACAATCTGGAGGAGTTTGTTCTCCGTCCGGCTCCACAGGGAGTCACGGTGAAGTGCCGCATCTCTCGGGATAAGAAAGGCATGGACCGCGGCCTCTACCCCACATACTTCATGCATCTTGAGAGAGAAGACGGCAAAAAGGTGTTTCTATTGGCGGGACGCAAGAGGAAAAAGAGCAAAACATCCAACTATCTGATCTCTGTAGACGCCACAGATCTGTCCCGCGAGGGCGAGAGCTTCATCGGGAAACTCAGGTCTAATCTGATGGGAACCAAGTTTACAGTGTATGATAACGGCACAAACCCATCTAAAAACCCTGGTGCGCTGCTGGAGGAGACAAACACACGACAGGAGCTCGCCGCCATATGCTACGAGACCAATGTTCTGGGTTTTAAAGGGCCGCGGAAGATGACTGTGATCATTCCTGGCATGAACATGAGTTTTGAGCGGGTCCCGGTTCGGCCTGCCTCTgagcaGGAGTCTCTGCTGAGTAAATGGCAGAATCATTCGCTGGAGAACCTCATCGAGCTGCATAATAAAGCGCCGGTGTGGAACGATGACACACAGTCTTACGTGCTGAACTTCCACGGCAGAGTCACTCAGGCCTCCGTCAAGAACTTCCAGATCGTCCACGACAATGACCCGGACTACATCGTGATGCAGTTTGGCCGTGTGGCGGAGGACATCTTCACTCTGGACTATAACTACCCCATGTGTGCCCTGCAGGCCTTCGCCATCGGCCTGTCCAGCttcgacagcaagctggcctgcGAGTGaccctgagacacacacacatgtatacatacacaccaCACATGTTGGTATAATGCactacaaaaatgcttttcttacttagatatttaattttttctactccaaatatctaacaattcttaaatcaagaagcattttctagacaagcaaaaaatactgtcttgttttcagaaataatatgccagaTATTCGTGTTATtccttttaaaataagtttttttttagctcaacCCATTtgtagattatttagcttgttttaaggtaaaactcacttaattttggcatattatttcttaaagtaAGACAATGTGTTTTACTTGTCtataaaaagcttcttgatttaagaattttcagatatctggactagaaacaagacagaaaatctaagtaagaaaagtatATTTTGCCGTGTGGTGGTTAACGAGGACACTTTGTAGGTGTgatgtattttatacattaaaaatgcttACTATATGGCTCAACGcctaaaccacaggtgtcaaactcagttccaggagggccgcagctctgcacagtttagttccaacccaaattaaatacacctgattaaactaattcaTTCAAGCTTGTTTGaagcctacaggtaagtgtgttggaacatggttggaactaaactgcagggctgcggccctccaggaactgagtttgacacccctgccctaaacccaaccctcagagCAAACCTGTGGCAATATTTGAATGTGAAAAGACCCCATAAAGTATAATTCTAAAGCAtattgaattacaaggacacaaggcatgtctttgtaaacaaaataatagagtacaactaaggTTTACCCATGTCAATATACAAAtttctgtccttgtaaaccaccaaaccagtacacacacacacacacaagcctctcATGCTCAGGTCACCTCATCTGTCCTACAATTCACACCAGAGCAAGAGGACTTGTACTCCATttcaacaaattaaacaaaagagACCAAATTAACTGTTGTACAAGGCAAATGCTTCATCTAATCTTTTACTACCTGGAATAACTGACAAGAtcctctttttttctgaaaagagAAGCTGGATTTATGCTTAACGAACCAATAGAAAAGAAACCGAGGTTTGTTCTTACACTGACAGATTATATTTAGGATACTTATGATATTTTCTGTGCTGTTCTGATGGATCTAAAGAGTATGTGGTTAGGGAGAGTGTTCAGAACATTTCAccactaaaactaaaaaaattatattttgcatcaagaaaattaattaattacgagcaaaaacaaaataatgtaataaCGATAGTTTTATGACTTGCACTACTTTGTACTAGATGCATTAGAGATAATTGGAATTTTTAAGTTAATTTTCTTTGTGTacaatataattcattcattttccctctttTGATATGAAGGTGATGTGCTCTAAATGTATTTTCAtaagatttagattttaaattCAGATGATGTTGATGTATTTTTGATGGTTTTAACACTTTCTGTTTTAACTTCATATCTGCTCACCAAAAATCCCTGAGAAAATACATTGCATGCTAATCAATGAAGAAGAACGCTGGATTCTTCTCTCTCGTCCCCTCGTATTAACCTTTCAAAACGGACACACACTTCTGGTTGTTTACCGCTGCTGCATGGATTGTGAACGTTGCCTTAATATGTTGCTGTACTGTAAATAGTGTCTGAGTGTCAGAAGAGTGTTTACATCACAGAGAAGGGAAGTTCAAGCACATTTGTTCCTGTTCAGTGTGTATTCCTATTGATATGATTGATATGTGTGTTGGTGTTTATCATATgttgtgtgtctatatatatatatataaagtaaaacattttgttttcattttaaatcaataaCCTGTTTGCAcaaactgtatttttgatgacacTGTTAATAGAAATACAGTTATTAAAGgtcataaatatttacaaaatgaatGCATTACTTTGGATCCTGACTGTGTGACTAAAGCTGGATAATTAAAAACCTGCTACACATTTCTCAGCCAAAGGATTTAGCTTTCAAGCTGCATCTTTCTCATAGATTGAGATCATTTCTTTCTGATCAGTTGTATTTTTC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-714 Predicted to be located in extracellular region. Orthologous to human TULP3 (TUB like protein 3).

Ensembl:

ensembl_id ENSDART00000093236

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057982 lncRNA downstream 209365 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 234870 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057981 lncRNA downstream 364330 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057980 lncRNA downstream 433060 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057307 lncRNA downstream 445406 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055154 lncRNA upstream 334354 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057984 lncRNA upstream 351276 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00057308 lncRNA upstream 418402 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057985 lncRNA upstream 418891 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057986 lncRNA upstream 444649 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00055140 mRNA downstream 66029 1388965 ~ 1403077 (-) True XLOC_028396
TCONS_00055138 mRNA downstream 108611 1301436 ~ 1360495 (-) False XLOC_028395
TCONS_00055139 mRNA downstream 144965 1303337 ~ 1324141 (-) True XLOC_028395
TCONS_00055137 mRNA downstream 321451 1103158 ~ 1147655 (-) True XLOC_028393
TCONS_00055136 mRNA downstream 400951 1054708 ~ 1068155 (-) False XLOC_028393
TCONS_00055142 mRNA upstream 149714 1647098 ~ 1684335 (-) False XLOC_028398
TCONS_00055143 mRNA upstream 150668 1648052 ~ 1684347 (-) True XLOC_028398
TCONS_00055144 mRNA upstream 191928 1689312 ~ 1720648 (-) True XLOC_028399
TCONS_00055145 mRNA upstream 235441 1732825 ~ 1757460 (-) True XLOC_028400
TCONS_00055146 mRNA upstream 268949 1766333 ~ 1785120 (-) False XLOC_028401
TCONS_00055131 other downstream 520264 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 660653 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 783687 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 563140 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1177722 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2995182 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3048825 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3433027 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000068_00161849_00169705.mRNA True 1594 mRNA 0.56 10 CI01000068 161849 ~ 169829 (+)