RNA id: TCONS_00055142


Basic Information

Item Value
RNA id TCONS_00055142
length 6463
RNA type mRNA
GC content 0.53
exon number 21
gene id XLOC_028398
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1647098 ~ 1684347 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAAACCGGAGCCGCGTCCGTCCCGCACTGTCAAAAACCCACTCCAAACACCAACACAGGCGCAGCCGGTACCGTCGTTTCCCCGTGCAGCCATGAGCAGTGCAGCGGTGCAGTTAGGCTGAGCTCGCTCGGGTTCGCGGGCTGCTCGGGCTGCCGCTGGAGCGGGTTTCTCCACTCTCATCCTCCGTCATTTCTTTAACTTTTCAAACACGCAGCCGCGCCGGAGCGGAGCGGACCGGAGCATGGGATCCCCGGACTCTTAGAAACCGAATCTGAGCCGGGAGTTTGACCGAATTTCAGCGAAACGATGGCGAACTCGACGGGGAAAAACCTCCCCGAGCAGCGGAGGAAAGGACAGGCTTTCCTGGACGAGCTGCGGCAATTTCACCACAGCAGAGGATCTCCGTTTAAAAAGGTTCCCGTGGTGGGTGGGAAGGAGCTGGACCTGGGCGCTCTCTATGTGAGAGTGGTGTCTTTAGGGGGCTTCGCGAAGGTGTCCGACAAGAACCAGTGGGTCGAGCTGGTCGAGGATTTCCAATTCCCCAGGAGTTGCTCGAATGCTGCTTTTGTTTTGAAACAGTACTACCTTCGCTATTTAGAGAAGTATGAAAAGGTGCATCACTTTGGAGAGGAAGATGAAGAAGAGCAGCCGGGGAATCCTAAACATTTGCTTCCGATTGGTGCAATACCCACGTCATACAACTACCAGCAACACACTGTATCAGACTATCTCCGCCAAAGCTATGGGCTATCGACGGATTTTATCCCTCCATCCGATTACAACAAACTGGTGCTGTCCCTCTTATCTGGGCTCCCGAATGAGGTGGACTTCGCCATTAACGTGTGCACGCTGCTGTCCAACGAGAGCAAGCACGCCATGCAGCTAGAAAAAGAGCCCAAACTCGTCACACTGCTGCTGGCACACGCCGGAGTATTCGACGACTcattaggCAGCTTTTCTGCTGTATTCGGGACAGACTGGCAGGAGAAAACGTCACGAGATTTTGTGAGGTTTTGGAAAGATGTCATTGAAGACAATGAAGTCAAAGATCTCATCTCAGATAAGAGCTGCACACCtcaaaATGGATTGGAGCTGAGGGACATCTGCACTCCTCTCTTCCACCCGGCCCGTAACACCGGCATTGGGGACGTGGAGGGCCAGCGGGTGCTGCAGGTTGCGATGATCCTGAGGAATTTGTCCTTCGAGGAGGCAAACATTAAACTGCTGGCAGCTAATCGCACATGTCTGCGCTTCCTCTTACTGTGCGCTCACTGCACCTTCATCCAGCTGCGGCAGCTCGGCCTCGACACACTCGGAAACTTCGCCGGAGAGCTTCAGCTGGATCCGGTTGATTTCCGAACAACGCATCTGATGTTTCACACCATCACCAAATGCTTATTGTCACGGGATCGTTTTCTCAAAATGAGGGCCATGGAAATCCTGGGGAACCTGAGCAAAGTGGAGGATAACGGTGTGCTGATCTGCGAGTATGTGGATCAGGAGTCATACCGAGAAATCATTGCTCTTCTGACGCTGCCGGACGTCATGCTGGTCATCTCTGCGCTGGAGGTCCTGTATCAGCTGGCTGAGCTCGGAGAGATAACCTGCTCCAAAATCTCCTCCGTGGAGAGAAGCATAGATCTTTTAGTACGGCTGGTCTCGGTGGACCTGCAGACATTCGGACCGGATGCACTGACGGCAGTGAAACTGATCGAGCATCAGGCCTCCAGCTCTCAGGTGTCCGAGGTTCGACCGCAGCTCGTAGAGCATGTTCCTGCAGCTACGCAAGGCACTCCTGCTGCTGTAAACAGGACACCTGTGCAGTCTACGCCTCCACCAGGGATCGTGGAAATAGACGGAGAGAAATTTACGACTCAGTGGCTAAATGCTCATTTTGAGGTGCATTCAGATGGGTCAGTCTCGCGCTCAGAGATGTACTCTGAATATCTGGCAACCTGCAGCAAGATGGCACGGGGTGGTGTGCTAACATCCAACAACTTCTACAAATGCCTGCGGACGCTGTTTCCTAATCACACAGTAAAACGTGTGGAGGACACACGGCTGAATGGGCAGGCTCAAATCCACGTGGTTGGTGTTCGAAAGAGGGCGATTCCTCTTCCTGTCCAGCTTTAttatcagcagcagcagcagcaggccaGTCCTGCACCAGTTCCCAAACATGAAGCCCCCTCAGAAACCCCTCAGGCCCATTCAGCATTGCCCCCTGGTGTGGGTGGGCAGCCTGTCCGGGCACCAGCACCAAGCCTTACTGCCGGCCAGGCAGCACCACAGGTGGCCTTCACCATGCATGCACCGCCGCTCGCTAACGCTCCTAGTGCTCCAGCTCCACGACCCCCCCTCAACCCACCAGGACAAGCCGCACTTCCCCCCTGCCCACCAGCCGCTGCCCCAGTTCCCATACGCCCGAATGACATCCTCAAAACAGCCATGATCCAGAGCTCCATCCCCACGGCCTCCGCTGCTCCTGCTGTTCCCAACCACAGTGGCTCGTCTACCCAGCAGCCTCTGCTCCATCACGCCCCCGTTGCACTGATCCAGCAGGGGCCACCCCCACAGGGACACGTATTTACTGGTCAAGTGCATGGGGTCTGTACATCGGTGGGCCAGCAGCGCCCTCAAGCCCCTTCCCAGGAGGCCATGGTGCTGGCGCAGCCTCAGTATGTGACCACACCATGCACTCCACTGATGGCAGGAGGGCAGGTTGTAACTGTTGCAGGCGTGACAGGCTCTCGTGTTGCATTTCAGAACATTGCCCCCAAACCTACACATCAAGTACAGTCGCCACAACCTCCGCCAACACAACCACAGAGCCTAGTCATCGTCAGCCCAAATCAACAACCCAACACTGCATTTGCCCCTGCCATCCATCAGATCGTTCTCACCAACCCCAATCCACAGCAAACACCGGCTCCTACTTCTCCGAATGCGGCGGTCCCGAACCCAGCGCCGGTGCAGCCGCACACTGTCAGCCAGATGCTGTCAGTAAAGCGTCAGTTCCAGCCCACCCCGCCACCCGCTGCTTCCCCAGTCCAGCCTACCTCCACTGAATCCAGTCTGATCAAACAGCTACTGCTTCCCAAACGCGGTCCTTCCACCCCTGGTGGAAAACTCATCCTCCCTGCTCCACAAGTCCCCGCTCCTGTTAGCACCAGGGCGCCCAGTCCGCAAGTCGTATACCAGGTGACGAACAGCGCTCCAGTGCCACCTCAACCACAGTTAAACGTTCAGCTTATGCAGAGTCCCGGTGCCGTTCCCATCTCCATCCTCCCCGGACAGATCATCTCCACCTCCACCTCTGGCACCATCCTCCAAGCCACCCCCAGCAACCAAGTTACCTTCACAGTAGTGCCAAACTCTGGCTTTCCAGGCCAGGGAGTGCAGACCCCACCCACAATCGGCCTGCAGCTGACTCAGACTCCGCCTCTGCCAGTAGCAGGAGCCACGCCCATCCCGCCTTTCAGAGGCGACAAAATCATCTGCCAAAAGGAAGAGGAAGCCAAGGACGCCACAGGACTGCACGTCCACGAGCGCAAGATCGAGGTCATGGAGAACAACTCCATCGCCGACGCTTCGGCCAAAGCCAGCAACGGGGAAACGGCAGAAGCGGAGGCACCCAAGCTGCTTAACGGGAGGAAATTCGACTCTAGTCTACCTCCATACCACTCAGGGAACAGCCCATCAGAGGCGCCCAATGGTCCTGTAGCGCAGAGCGGATGCGACGGGAAGCAGACACCTGCGGACCCTAAAAAGCTAATGGTGAACGGAGTGTGCGACTTTGAGCGATCGGACGCCGCTTCCCATCCAAGCAAAAACATTCCAAATCACAAGGCTTCCAAACACATGGGGAACGGGGAGGTGCTGTCGCCGAAAGCTCACGGTGCACTGGGCCTTGCGGAGGACACTGCCAGAGCAGAGCCACCTGAACGCCTGGCCAACGGGCCCTGCCACGGCGCAGACCTCTCCAATGGGCCCAGCTCAGAGACTTTAAGCTTGAGGCCACAGCACGCTCCTCATAACCACTCGCCGCCTCCAGCCACTCCCAACCCGCCGTCAGCTAACGGCACCGCGGAGAGCCGGACGCTGAAGAGACCGCTGGAGGACGCGGACCGAGGTACCTCCGCTATCCCTGCTAAAATGGGTGTACGGATAGTGACCATCAGCGACCCCAACAATGCCGGTAACAGCGCCACCATGGTGGCTGTGCCAGCGGGCGCAGACCCAAGCACAGTAGCAAAAGTAGCAATAGAGAACGCAGCGCAGCAGAGACCAAGTGTGCCCTCGCCGCTGCCTGAAACCAATGCTCAGCAGCCTGTGTCAGTGCAGACTCCGCCTCCTGTGGATCCGGCTGCACAGGGAACCAATCAGAGTTCTCCAGCACCCGCCCTCTCTCCAGAGCAAACACGGAAACCTGGACAGAACTTTAAGTGTCTGTGGCAAGCATGCAAACGGTGGTTTGACACGCCATCACAGGTGTTTTACCATGCAGCGACCCTTCATGGCAGTAAAGACTCATACCCAGGGCAGTGCCAATGGGAGGGATGTGAACCTTTTCCTCGCCAGAGATTATCCTTCATCACACACCTACAGgaTAAGCACTGCTCGAGGGAAGCACTCATAGCTGCACTCAAACTGGAGGAGCAAACGCAAGGCAGCAACCCCAACACTTCCAAGTCTCCTCCAGCGGCGGTCAGcagtcctcctcctcctcccagaCCCCCGAAAGCACTCGTCAACCACCCCAGTGCAGCTCTGATGGCGTTACGCAGGGGCTCCAGGAACCTCGTGTTCAGGGACTTCACAGATGATAAAGAGGGACCAGTGACCAAACACATTAGACTAACTGCTGCCTTAACGTTAAAGAACATCGCCAAGTACTCTGATTGTGGACGGAAGATGGTGAAGCGGCATGAGAATCATCTCTCTGTGCTGGCGCTGAGCAGTATGGAGGTCTCCACCACGCTCGCTAAATGCCTTTACGAACTCACGCGCTCTCTGCAGGCCTGAGCTCAACCCAAAAAACCCTCGGAAGGAGACGGAAAAACCTCCCATTTCCCCCATTCTGCTGCCACACAGGTCGCCAGCGGTGTTggttccctccctccctccccgCTCCTCTATCTCTCTCCATTCCACGACTCCCTCCCTCAAAAAAAACTGCCACGGGTCTTCCACCAGCCACTCAGAAACCAGCGCCCATCTCACTCTCTCCATATTTATACGCCTGGCCCAAACGAGCACATTTTTATAGTCCCAGACGAACGAGCGCCTCTGATTGGGCGGAGGGGGATTCTGTGGGCGGGGCGAAGTGGACGGCGAAGAGGTGCGGCTAGAGTTTTTGTTTCGTTTCTTTCTTTATAACTTGATGATAGCTTGGTTTTTTCTTACTTGAGCCGATTAtattttcacttatttattattgAGATAAATACCGCTATGAGTAAATGAGAAAAACAATTGTGTACATATTTGTGAATAGATATAAagttacaacaaacaaacaaacaaaaaaaaaagagagaaagaaaaatcaCCCTCCTTCATGCCGCTGCTGCCCTCTTGGTATCAGAAGCATTACGTTTGTTTAATAGTAGGTTGAGACTCACTTTTGGTTTGGttctttttatataaatatatataatttcaacCCCTGGTTAACTCGTATGAGACGTGATTCTATACTCAGCAGTGGATGAATGTACTTAAAACCCTGTAAATATTCTGCGAAGGTACTGATGCTGTAAAGTTTTTCTTTGGGAGGGCTGAGATTGTTTTTCTTTGTGCAactgtgatttgttttttttctccccctttTTTTTGTACTATTATAACTTGTAGAACTCATTTTGCTGGCTGAAAGAGTATGAAATAATATATCATATGTCATTTTGTAgaagagacacacacaaaaaaaaaacacacacacacaaatattgaaGGTATTCCCCTCAACCTGTATTCACTGTAAGCGTGGAGTACGAGCCGCTCGCCCGTACCTTCCTTGATtctttttgtatttgtaaattggTTTAAATACATGGAGTTTTATACAGGTTTTCTCATGTGTTCTTTGCTTTCTGTGCAGGTATGATATTTTTCCTCCAGACCCCTTTTTtctatcttaataataataataatagtgtgggATTTTATTGTACTTCATTTcttttgtttcctttttgttCATCCATTCTTACGACCACGCCACATTCCGGCTCCCGGACCCCAGGCTGTCCTCTCTGCTGTGTGTTGTGTAACATTTATTACTGCCTGTTGTGTTAGCATCCCAGCGGGGGCGCTGCCCCTGACCTCCCCCTTTCACCATTTCTGCAGTGTCTGTAGGGTGTGCGATGATACATATATCTAACAGTCTGATATAGATTGGCTTCAGTCTACTTTGGTGACTgtttatagtttttaaataaaagactgaacatttttga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko05225 Hepatocellular carcinoma
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-6311 Predicted to enable DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 6. Orthologous to human ARID2 (AT-rich interaction domain 2).

Ensembl:

ensembl_id ENSDART00000019144

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057982 lncRNA downstream 387357 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 412862 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057981 lncRNA downstream 542322 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057980 lncRNA downstream 611052 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057307 lncRNA downstream 623398 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055154 lncRNA upstream 147403 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057984 lncRNA upstream 164325 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00057308 lncRNA upstream 231451 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057985 lncRNA upstream 231940 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057986 lncRNA upstream 257698 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00055141 mRNA downstream 149714 1469106 ~ 1497384 (-) True XLOC_028397
TCONS_00055140 mRNA downstream 244021 1388965 ~ 1403077 (-) True XLOC_028396
TCONS_00055138 mRNA downstream 286603 1301436 ~ 1360495 (-) False XLOC_028395
TCONS_00055139 mRNA downstream 322957 1303337 ~ 1324141 (-) True XLOC_028395
TCONS_00055137 mRNA downstream 499443 1103158 ~ 1147655 (-) True XLOC_028393
TCONS_00055144 mRNA upstream 4977 1689312 ~ 1720648 (-) True XLOC_028399
TCONS_00055145 mRNA upstream 48490 1732825 ~ 1757460 (-) True XLOC_028400
TCONS_00055146 mRNA upstream 81998 1766333 ~ 1785120 (-) False XLOC_028401
TCONS_00055147 mRNA upstream 86731 1771066 ~ 1776352 (-) True XLOC_028401
TCONS_00055148 mRNA upstream 104413 1788748 ~ 1801519 (-) False XLOC_028402
TCONS_00055131 other downstream 698256 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 838645 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 961679 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 376189 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 990771 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2808231 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2861874 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3246076 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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