RNA id: TU2380829


Basic Information

Item Value
RNA id TU2380829
length 340
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2082163
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 39958864 ~ 39959203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tactgtaggaccctgtgttgtcttactctctctgttatctactgtaggaccctgtgttgtcttactctctctgttatctactgtaggaccctgtgttgtcttactctctctgtttACGGTAGGAGCCTGTGTTGTCTTACTCTCTCTGCCATCTACTGTAGGACCCTGTgttgtcttactctctctgtttactgtagGACACTGTTGTCTTACTCTCTGTTTACTGTAGGACCCTGTgttgtcttactctctctgttatctactgtaggaccctgtgttgtcttactctctttgtttactgtaggagcctgtgttgtcttactctctctgtttactgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2380813 lncRNA upstream 12380 39945852 ~ 39946484 (+) True G2082147
TU2380811 lncRNA upstream 13052 39945604 ~ 39945812 (+) True G2082145
TU2380579 lncRNA upstream 18509 39940074 ~ 39940355 (+) True G2081950
TU2380474 lncRNA upstream 21570 39937081 ~ 39937294 (+) True LOC110507223
TU2380572 lncRNA upstream 35147 39923502 ~ 39923717 (+) True G2081943
TU2380830 lncRNA downstream 972 39960175 ~ 39960409 (+) True G2082164
TU2380845 lncRNA downstream 27400 39986603 ~ 39987111 (+) True G2082172
TU2380852 lncRNA downstream 37080 39996283 ~ 39996514 (+) True G2082178
TU2380853 lncRNA downstream 40473 39999676 ~ 39999882 (+) True G2082179
TU2380857 lncRNA downstream 45845 40005048 ~ 40005247 (+) True G2082183
XM_036965017.1 mRNA upstream 20785 39781189 ~ 39938079 (+) False LOC110507223
XM_036964981.1 mRNA upstream 257652 39694561 ~ 39701212 (+) True LOC110507222
XM_036965220.1 mRNA upstream 277304 39667989 ~ 39681560 (+) False LOC110508028
XM_036965219.1 mRNA upstream 278732 39668004 ~ 39680132 (+) True LOC110508028
XR_005040116.1 mRNA upstream 919239 39039573 ~ 39039625 (+) True LOC118944799
XM_021586905.2 mRNA downstream 335628 40294831 ~ 40297552 (+) False ssr3
NM_001160569.1 mRNA downstream 335637 40294840 ~ 40297545 (+) True ssr3
XM_036965107.1 mRNA downstream 702043 40661246 ~ 40670079 (+) False LOC110508037
XM_036965110.1 mRNA downstream 702109 40661312 ~ 40670079 (+) False LOC110508037
XM_036965108.1 mRNA downstream 702112 40661315 ~ 40670079 (+) False LOC110508037
TU2380828 other upstream 1113 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 25029 39931874 ~ 39933835 (+) True G2081949
TU2380477 other upstream 45786 39895667 ~ 39913078 (+) False LOC110507223
TU2380510 other upstream 121481 39827658 ~ 39837383 (+) True G2081884
TU2378436 other upstream 2013713 37944932 ~ 37945151 (+) True G2080014
TU2381755 other downstream 884311 40843514 ~ 40844780 (+) False LOC110508042
TU2381759 other downstream 885626 40844829 ~ 40846039 (+) False LOC110508042
TU2381889 other downstream 1022167 40981370 ~ 40984854 (+) True G2083005
TU2382143 other downstream 1253001 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 1547156 41506359 ~ 41507173 (+) True LOC110507232

Expression Profile