RNA id: TU2382754


Basic Information

Item Value
RNA id TU2382754
length 245
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2083755
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41786066 ~ 41786310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacatacacacacacacacacacacacacacacatacatacatactgtattttataccatccaCTGCACCTTATCTATGCCGCtaggccatcgctcatccatatacttgtATGTACATATTGTCATTCACCCCCTTTAGATTTGTGCGCATAAGGtagttgttagattacttgttagatattactgcactgttggaactagaagcacaagcatttcgctacactcgcattaacatctgctaacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2382751 lncRNA upstream 2546 41783255 ~ 41783520 (+) True G2083752
TU2382749 lncRNA upstream 3357 41782467 ~ 41782709 (+) True G2083750
TU2382739 lncRNA upstream 34838 41750984 ~ 41751228 (+) True G2083743
TU2382733 lncRNA upstream 40493 41745365 ~ 41745573 (+) True G2083737
TU2382732 lncRNA upstream 42140 41743679 ~ 41743926 (+) True G2083736
TU2382766 lncRNA downstream 7306 41793616 ~ 41793914 (+) True G2083766
TU2382767 lncRNA downstream 7691 41794001 ~ 41794272 (+) True G2083767
TU2382780 lncRNA downstream 27339 41813649 ~ 41814023 (+) True G2083777
TU2382797 lncRNA downstream 37553 41823863 ~ 41874849 (+) True G2083785
TU2382838 lncRNA downstream 140673 41926983 ~ 41930117 (+) True G2083817
LOC118944685 mRNA upstream 4230 41778921 ~ 41781836 (+) True LOC118944685
XM_036965019.1 mRNA upstream 214144 41521446 ~ 41571922 (+) True dhx36
XM_036965039.1 mRNA upstream 279455 41485189 ~ 41506611 (+) False LOC110507232
XM_021588498.2 mRNA upstream 582371 41194800 ~ 41203695 (+) True LOC110508050
XM_036965615.1 mRNA upstream 600602 41180486 ~ 41185464 (+) True LOC110508049
XM_021587167.2 mRNA downstream 445048 42231358 ~ 42242002 (+) True LOC110507284
XM_036965239.1 mRNA downstream 612379 42398689 ~ 42416136 (+) True LOC110507235
XR_005040057.1 mRNA downstream 698546 42484856 ~ 42492905 (+) False LOC110508060
XM_021588510.2 mRNA downstream 698549 42484859 ~ 42488600 (+) False LOC110508060
XM_036965041.1 mRNA downstream 705150 42491460 ~ 42492431 (+) True LOC110508061
TU2382447 other upstream 278893 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 573294 41212204 ~ 41212772 (+) True G2083239
TU2381889 other upstream 801212 40981370 ~ 40984854 (+) True G2083005
TU2381759 other upstream 940027 40844829 ~ 40846039 (+) False LOC110508042
TU2381755 other upstream 941286 40843514 ~ 40844780 (+) False LOC110508042
TU2382880 other downstream 184949 41971259 ~ 42112036 (+) False G2083851
TU2382881 other downstream 186518 41972828 ~ 42012992 (+) True G2083851
TU2383238 other downstream 474213 42260523 ~ 42261637 (+) True G2084156
TU2383825 other downstream 1276978 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 1745960 43532270 ~ 43532578 (+) True G2085037

Expression Profile