RNA id: TU2382865


Basic Information

Item Value
RNA id TU2382865
length 272
lncRNA type antisense_over
GC content 0.59
exon number 1
gene id G2083839
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41950875 ~ 41951146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggtgggggggggggtgttacagAGGGATACCTACCATGGCTACTGCGGCAGCAGCCTGGTTGACCTGGTGTTGGCCAGCCTTTATCTTGGCCTGCAGGTGGGCTGGAGGGTGGAAGTATTTACACTTCTCCCTGGAGCAGCGACCCTTGATGTAGTCCATACACACGGTCACGGTGTTGTCGTTGGTGTCTATCATGGTGCTGTCTGAGGGGTGGGCGAAGCGACAGTCACTCTCCCCCCGCGTACAGTTACCTCTCTGGTACTCCCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2382860 lncRNA upstream 418 41949039 ~ 41950457 (+) True G2083836
TU2382862 lncRNA upstream 1931 41947744 ~ 41948944 (+) True G2083837
TU2382859 lncRNA upstream 5011 41945631 ~ 41945864 (+) True G2083835
TU2382858 lncRNA upstream 5382 41945096 ~ 41945493 (+) True G2083834
TU2382857 lncRNA upstream 6595 41943973 ~ 41944280 (+) True G2083833
TU2382875 lncRNA downstream 13404 41964550 ~ 41964841 (+) True G2083848
TU2382882 lncRNA downstream 14197 41965343 ~ 41965559 (+) True G2083852
TU2382886 lncRNA downstream 21089 41972235 ~ 41972805 (+) True G2083856
TU2382844 lncRNA downstream 30472 41981618 ~ 41983708 (+) True G2083820
TU2382890 lncRNA downstream 37354 41988500 ~ 41990554 (+) False G2083860
LOC118944685 mRNA upstream 169039 41778921 ~ 41781836 (+) True LOC118944685
XM_036965019.1 mRNA upstream 378953 41521446 ~ 41571922 (+) True dhx36
XM_036965039.1 mRNA upstream 444264 41485189 ~ 41506611 (+) False LOC110507232
XM_021588498.2 mRNA upstream 747180 41194800 ~ 41203695 (+) True LOC110508050
XM_036965615.1 mRNA upstream 765411 41180486 ~ 41185464 (+) True LOC110508049
XM_021587167.2 mRNA downstream 280212 42231358 ~ 42242002 (+) True LOC110507284
XM_036965239.1 mRNA downstream 447543 42398689 ~ 42416136 (+) True LOC110507235
XR_005040057.1 mRNA downstream 533710 42484856 ~ 42492905 (+) False LOC110508060
XM_021588510.2 mRNA downstream 533713 42484859 ~ 42488600 (+) False LOC110508060
XM_036965041.1 mRNA downstream 540314 42491460 ~ 42492431 (+) True LOC110508061
TU2382447 other upstream 443702 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 738103 41212204 ~ 41212772 (+) True G2083239
TU2381889 other upstream 966021 40981370 ~ 40984854 (+) True G2083005
TU2381759 other upstream 1104836 40844829 ~ 40846039 (+) False LOC110508042
TU2381755 other upstream 1106095 40843514 ~ 40844780 (+) False LOC110508042
TU2382880 other downstream 20113 41971259 ~ 42112036 (+) False G2083851
TU2382881 other downstream 21682 41972828 ~ 42012992 (+) True G2083851
TU2383238 other downstream 309377 42260523 ~ 42261637 (+) True G2084156
TU2383825 other downstream 1112142 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 1581124 43532270 ~ 43532578 (+) True G2085037

Expression Profile