RNA id: TU2384165


Basic Information

Item Value
RNA id TU2384165
length 209
lncRNA type read_through
GC content 0.36
exon number 1
gene id G2084916
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43199022 ~ 43199230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtaTACACagtgtacacaatccatgtctcaaaaaaatccttctttattaacctgtctcctccccttcatctacactgattgaagtggatttaacaagtgacatcaataagggatcatagatctcacctggattcacctggtcggtTTATGTcaggttcttaatgttttgtatattcaATGTAGATGGTTTATTATCCTTGGAAAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384149 lncRNA upstream 15688 43183134 ~ 43183334 (+) True G2084902
TU2383845 lncRNA upstream 54178 43143796 ~ 43144844 (+) True G2084675
TU2383753 lncRNA upstream 113368 43083011 ~ 43085654 (+) True G2084604
TU2383826 lncRNA upstream 133481 43064896 ~ 43065541 (+) True G2084660
TU2383811 lncRNA upstream 180925 43015481 ~ 43018097 (+) True G2084647
TU2384169 lncRNA downstream 12525 43211755 ~ 43211958 (+) True G2084920
TU2384172 lncRNA downstream 19776 43219006 ~ 43219267 (+) True G2084923
TU2384174 lncRNA downstream 23216 43222446 ~ 43223063 (+) True G2084925
TU2384175 lncRNA downstream 26909 43226139 ~ 43226359 (+) True G2084926
TU2384178 lncRNA downstream 32430 43231660 ~ 43231877 (+) True G2084929
XM_036965656.1 mRNA upstream 55914 43111797 ~ 43143108 (+) True LOC110508067
XM_036965654.1 mRNA upstream 58201 43111797 ~ 43140821 (+) False LOC110508067
XM_036965655.1 mRNA upstream 58201 43111797 ~ 43140821 (+) False LOC110508067
XM_036965659.1 mRNA upstream 87354 43096643 ~ 43111668 (+) False LOC110508068
XM_036965664.1 mRNA downstream 17480 43216710 ~ 43293841 (+) False LOC110508082
XM_036965666.1 mRNA downstream 17481 43216711 ~ 43293841 (+) False LOC110508082
XM_021588536.2 mRNA downstream 350022 43549252 ~ 43557059 (+) True LOC110508093
XM_036965634.1 mRNA downstream 374106 43573336 ~ 43700703 (+) False usp32
XM_036965635.1 mRNA downstream 374106 43573336 ~ 43700703 (+) True usp32
TU2383825 other upstream 134765 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 937385 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 1086986 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 1186030 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1691849 41506359 ~ 41507173 (+) True LOC110507232
TU2384320 other downstream 333040 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 533165 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 918993 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1208823 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 2287407 45486637 ~ 45487737 (+) True LOC110508103

Expression Profile