RNA id: TU2384169


Basic Information

Item Value
RNA id TU2384169
length 204
lncRNA type read_through
GC content 0.52
exon number 1
gene id G2084920
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43211755 ~ 43211958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtggctttgggacaagtctctgaatgtccttgagtggcccagccagagcccggacttgaacccgatcgaacatctctggagagacctgaaaatagctgtgcagcaacgctccccatccaacctgacagagcttgagaggatctgcagagaagaatgggagaaactccccaaatacagatgtgccaagcttgtagcatcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384165 lncRNA upstream 12525 43199022 ~ 43199230 (+) True G2084916
TU2384149 lncRNA upstream 28421 43183134 ~ 43183334 (+) True G2084902
TU2383845 lncRNA upstream 66911 43143796 ~ 43144844 (+) True G2084675
TU2383753 lncRNA upstream 126101 43083011 ~ 43085654 (+) True G2084604
TU2383826 lncRNA upstream 146214 43064896 ~ 43065541 (+) True G2084660
TU2384172 lncRNA downstream 7048 43219006 ~ 43219267 (+) True G2084923
TU2384174 lncRNA downstream 10488 43222446 ~ 43223063 (+) True G2084925
TU2384175 lncRNA downstream 14181 43226139 ~ 43226359 (+) True G2084926
TU2384178 lncRNA downstream 19702 43231660 ~ 43231877 (+) True G2084929
TU2384162 lncRNA downstream 73948 43285906 ~ 43286743 (+) True G2084913
XM_036965656.1 mRNA upstream 68647 43111797 ~ 43143108 (+) True LOC110508067
XM_036965654.1 mRNA upstream 70934 43111797 ~ 43140821 (+) False LOC110508067
XM_036965655.1 mRNA upstream 70934 43111797 ~ 43140821 (+) False LOC110508067
XM_036965659.1 mRNA upstream 100087 43096643 ~ 43111668 (+) False LOC110508068
XM_036965664.1 mRNA downstream 4752 43216710 ~ 43293841 (+) False LOC110508082
XM_036965666.1 mRNA downstream 4753 43216711 ~ 43293841 (+) False LOC110508082
XM_021588536.2 mRNA downstream 337294 43549252 ~ 43557059 (+) True LOC110508093
XM_036965634.1 mRNA downstream 361378 43573336 ~ 43700703 (+) False usp32
XM_036965635.1 mRNA downstream 361378 43573336 ~ 43700703 (+) True usp32
TU2383825 other upstream 147498 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 950118 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 1099719 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 1198763 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1704582 41506359 ~ 41507173 (+) True LOC110507232
TU2384320 other downstream 320312 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 520437 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 906265 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1196095 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 2274679 45486637 ~ 45487737 (+) True LOC110508103

Expression Profile