RNA id: TU2385621


Basic Information

Item Value
RNA id TU2385621
length 980
lncRNA type intronic
GC content 0.39
exon number 2
gene id G2086060
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44583080 ~ 44584325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctactctctgttcatcatatatgcatagtcactttaaccatatctacatgtacatactacctcaatcagcctgactaacaggtgtctgtatatagcgtTGGTagtcttttttcaaatgtatttttactgttgttttatttctttacttacctacacacacacacacacacacacactattggttagagcctgtaagtaagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgttaggtctactacacctgttgtattcggcatttcactgtaaggtctacctacacctgttgttttcggcatttcactgtaaggtctactacacctgttgtattcggcatttcactgtaaggtctacctacacctgttgttttcggcatttcactgtaaggtctactacacctgttgttttcggcatttcactgtaaggtctactacacctgttgttttcggcgcacgtgacaaatgaactttgatttgatttgacatgaacTCTCCCCTCTCCACTTTTGGAGGATGCTTGCACTCAAATACTTGGcctctattggttgacctagcCAGCTACTCATGATGTATTGCTGGTTTGTTTTCTTGCTGTTGATGCAGTTTGAGATGATGGAACGTCCTATAGGAATGTAATGAATTACTATTATCCCAAAGATGGTTTATTtagttcagtaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2385616 lncRNA upstream 2749 44579506 ~ 44580331 (+) True G2086055
TU2385572 lncRNA upstream 68902 44513822 ~ 44514178 (+) True G2086017
TU2385558 lncRNA upstream 78911 44502386 ~ 44504169 (+) True G2086009
TU2385543 lncRNA upstream 105825 44476587 ~ 44477255 (+) True G2085995
TU2385534 lncRNA upstream 116577 44465556 ~ 44466503 (+) True G2085987
TU2385626 lncRNA downstream 698 44585023 ~ 44586021 (+) True G2086062
TU2385628 lncRNA downstream 3864 44588189 ~ 44645563 (+) True G2086063
TU2385629 lncRNA downstream 4070 44588395 ~ 44589190 (+) True G2086064
TU2385635 lncRNA downstream 17379 44601704 ~ 44601988 (+) True G2086070
TU2385637 lncRNA downstream 17927 44602252 ~ 44603040 (+) True G2086071
XM_036965396.1 mRNA upstream 350257 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 481189 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 485044 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 492865 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 513495 44030564 ~ 44069585 (+) True LOC110508084
XM_036965371.1 mRNA downstream 283662 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA downstream 283662 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA downstream 283664 44867989 ~ 45360655 (+) False cadm2b
XM_036965702.1 mRNA downstream 859580 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 859581 45443906 ~ 45479066 (+) False usp16
TU2385505 other upstream 173030 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 463841 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 849186 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1050502 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1518823 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 902312 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 945131 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 1212774 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1738759 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1909597 46493922 ~ 46496887 (+) False G2087592

Expression Profile