RNA id: TU2389190


Basic Information

Item Value
RNA id TU2389190
length 439
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G2088745
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47581382 ~ 47635302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagagacagaggcatagggtgcactatatagggcatagggtgcactatatagggaatagggtgcactatatagggaatagggtgcactatatagggaatagggtgctctatatagggaatagggtgcactatatagggaatagggtgcactatatagggaatagggtgcactatatagggaatagggtgcactatatagggaatagggtgcactatatagggaatagggtgcactatatagggaatagggtgcactatatagagaatagggtgccctatatagggaatagggtgcaatatatagggaatagggtgcactatatagggaatagtgtgcgctatatagggaatagggtgcactatatagggaatagggtgcactatatagggaatagggtgcactatatagggaatagggtgcactacatagggaataggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389141 lncRNA upstream 93533 47486814 ~ 47487849 (+) True G2088713
TU2389136 lncRNA upstream 106592 47474424 ~ 47474790 (+) True G2088709
TU2389134 lncRNA upstream 118936 47462015 ~ 47462446 (+) True G2088707
TU2389129 lncRNA upstream 123872 47457178 ~ 47457510 (+) True G2088703
TU2389123 lncRNA upstream 132747 47448306 ~ 47448635 (+) True G2088697
TU2389239 lncRNA downstream 17059 47652361 ~ 47655801 (+) True G2088781
TU2389234 lncRNA downstream 18076 47653378 ~ 47654856 (+) True G2088779
TU2389252 lncRNA downstream 50652 47685954 ~ 47686325 (+) True G2088793
TU2389268 lncRNA downstream 77008 47712310 ~ 47714080 (+) True G2088804
TU2389295 lncRNA downstream 111887 47747189 ~ 47747580 (+) True G2088823
XM_036965048.1 mRNA upstream 98348 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 504661 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 524461 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 577978 46978103 ~ 47003404 (+) False rab30
XM_036964775.1 mRNA downstream 5295 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 5295 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 765951 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 825147 48460449 ~ 48624448 (+) True gab2
XM_036964717.1 mRNA downstream 998070 48633372 ~ 48774681 (+) False zmp:0000001236
TU2389165 other upstream 43437 47532422 ~ 47537945 (+) True G2088732
TU2389161 other upstream 52834 47525440 ~ 47528548 (+) True G2088729
TU2387877 other upstream 542979 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 552819 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 1084495 46493922 ~ 46496887 (+) False G2087592
TU2389353 other downstream 218804 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 552907 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 552907 48188209 ~ 48191362 (+) False G2089020
TU2389531 other downstream 553192 48188494 ~ 48191362 (+) True G2089020
TU2389657 other downstream 797176 48432478 ~ 48455486 (+) True G2089124

Expression Profile