RNA id: TU2389239


Basic Information

Item Value
RNA id TU2389239
length 554
lncRNA type intronic
GC content 0.36
exon number 3
gene id G2088781
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47652361 ~ 47655801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatacagtagactcctccattagataatagatacagtagactcctccgttagataatagatacagtagactcctccattagataatagatacagtagactcctcAATAAGGTcagataatagatacagtagacttcCCTGttagataatagatacagtagactcctcAATATGGTcagataatagatacagtagactcctcCGTTAGATAATAGatacagtagactcctccattagatcatagatacagtagactcctccattagataatagatacagtagactcctccattagataatagatacagtagactcctccattagataatagatacagtagactcctccattagataatagatacagtagactcctccattagatagtagatacagtagactcctcCATTAGATAGTAGATACAGCTATAGTAGACTCCTCCAttagataatagatacagtagactcctccattagataatagatacagtaggctCCTACATTAGATAGTAGATACAGCTATAGTAGACTCCTCCAttagataatagatacagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389190 lncRNA upstream 17059 47581382 ~ 47635302 (+) True G2088745
TU2389212 lncRNA upstream 45267 47606534 ~ 47607094 (+) True G2088761
TU2389199 lncRNA upstream 62135 47589924 ~ 47590226 (+) True G2088752
TU2389141 lncRNA upstream 164512 47486814 ~ 47487849 (+) True G2088713
TU2389136 lncRNA upstream 177571 47474424 ~ 47474790 (+) True G2088709
TU2389252 lncRNA downstream 30153 47685954 ~ 47686325 (+) True G2088793
TU2389268 lncRNA downstream 56509 47712310 ~ 47714080 (+) True G2088804
TU2389295 lncRNA downstream 91388 47747189 ~ 47747580 (+) True G2088823
TU2389330 lncRNA downstream 146003 47801804 ~ 47802629 (+) True G2088848
TU2389342 lncRNA downstream 184436 47840237 ~ 47840751 (+) True G2088860
XM_036965048.1 mRNA upstream 169327 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 575640 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 595440 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 648957 46978103 ~ 47003404 (+) False rab30
XM_036965512.1 mRNA downstream 745452 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 804648 48460449 ~ 48624448 (+) True gab2
XM_036964717.1 mRNA downstream 977571 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 977571 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 1434082 49089883 ~ 49186113 (+) False trpc6b
TU2389165 other upstream 114416 47532422 ~ 47537945 (+) True G2088732
TU2389161 other upstream 123813 47525440 ~ 47528548 (+) True G2088729
TU2387877 other upstream 613958 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 623798 47027119 ~ 47028563 (+) True G2087865
TU2387651 other upstream 1155474 46493922 ~ 46496887 (+) False G2087592
TU2389353 other downstream 198305 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 532408 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 532408 48188209 ~ 48191362 (+) False G2089020
TU2389531 other downstream 532693 48188494 ~ 48191362 (+) True G2089020
TU2389657 other downstream 776677 48432478 ~ 48455486 (+) True G2089124

Expression Profile