RNA id: TU2389268


Basic Information

Item Value
RNA id TU2389268
length 321
lncRNA type intronic
GC content 0.35
exon number 2
gene id G2088804
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47712310 ~ 47714080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTTTAAACAGGTGTGCAActtaaatggtaccctattctaaagtagtgcactaaatagagtctaaagtagtgcactatatagggtctaaagtagtgcactatatagggtctaaagtagtgcactaaatagggtctaaagtagtgcactatatagggtctaaagtagtgtactatatagggtctaaagtagtgtactatatagggtctaaagttgtgcactatatagggtataaaGTAGTCTACTATATagggtctgaagtagtgcactaaatagagtctaaagtagtgtactatatagggtctaaagtagtgctctatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389252 lncRNA upstream 25985 47685954 ~ 47686325 (+) True G2088793
TU2389203 lncRNA upstream 53445 47593766 ~ 47658865 (+) True G2088753
TU2389239 lncRNA upstream 56509 47652361 ~ 47655801 (+) True G2088781
TU2389234 lncRNA upstream 57454 47653378 ~ 47654856 (+) True G2088779
TU2389190 lncRNA upstream 77008 47581382 ~ 47635302 (+) True G2088745
TU2389295 lncRNA downstream 33109 47747189 ~ 47747580 (+) True G2088823
TU2389330 lncRNA downstream 87724 47801804 ~ 47802629 (+) True G2088848
TU2389342 lncRNA downstream 126157 47840237 ~ 47840751 (+) True G2088860
TU2389367 lncRNA downstream 163418 47877498 ~ 47880284 (+) True G2088880
TU2389389 lncRNA downstream 195956 47910036 ~ 47911233 (+) True G2088901
XM_036965048.1 mRNA upstream 229276 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 635589 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 655389 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 708906 46978103 ~ 47003404 (+) False rab30
XM_036965512.1 mRNA downstream 687173 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 746369 48460449 ~ 48624448 (+) True gab2
XM_036964717.1 mRNA downstream 919292 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 919292 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 1375803 49089883 ~ 49186113 (+) False trpc6b
TU2389165 other upstream 174365 47532422 ~ 47537945 (+) True G2088732
TU2389161 other upstream 183762 47525440 ~ 47528548 (+) True G2088729
TU2387877 other upstream 673907 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 683747 47027119 ~ 47028563 (+) True G2087865
TU2387651 other upstream 1215423 46493922 ~ 46496887 (+) False G2087592
TU2389353 other downstream 140026 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 474129 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 474129 48188209 ~ 48191362 (+) False G2089020
TU2389531 other downstream 474414 48188494 ~ 48191362 (+) True G2089020
TU2389657 other downstream 718398 48432478 ~ 48455486 (+) True G2089124

Expression Profile