RNA id: TU2389389


Basic Information

Item Value
RNA id TU2389389
length 572
lncRNA type intronic
GC content 0.53
exon number 3
gene id G2088901
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47910036 ~ 47911233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactaggctgcctgcctcctctaaccactaggctacatgcctcctctaaccactagactacctgtctcctccaaccactaggctacctgtctcctttaaactctaaccactaggctacctacctcctctacactctaaccactaggctacctacctcctctaaccactaggctacctgtctcctctaaccactaggctacctgcctcctctaaccactaggctacctgtctcctctaaccactaggctacctgtctcctctaaccactaggctacctgtctcctctaaccactaggctgcctgcctcctctaaccactaggctacatgcctcctctaaccactagactacctgtctcctccaaccactaggctacctgtctcctttaaactcgaaccactaggctacctacctcctctacactctaaccactaggctacctacctcctctaaccactaggctacctgtctcctctaaccactaggctacctgcctcctctaaccactaggctacctgtctcctctaaccactaggctacctgcctcctctaaccactaggctgcctgcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389367 lncRNA upstream 29752 47877498 ~ 47880284 (+) True G2088880
TU2389342 lncRNA upstream 69285 47840237 ~ 47840751 (+) True G2088860
TU2389330 lncRNA upstream 107407 47801804 ~ 47802629 (+) True G2088848
TU2389295 lncRNA upstream 162456 47747189 ~ 47747580 (+) True G2088823
TU2389268 lncRNA upstream 195956 47712310 ~ 47714080 (+) True G2088804
TU2389394 lncRNA downstream 5125 47916358 ~ 47916670 (+) True G2088905
TU2389403 lncRNA downstream 21025 47932258 ~ 47932627 (+) True G2088912
TU2389404 lncRNA downstream 24251 47935484 ~ 47935821 (+) True G2088913
TU2389431 lncRNA downstream 103615 48014848 ~ 48015348 (+) True G2088939
TU2389439 lncRNA downstream 115088 48026321 ~ 48026972 (+) True G2088946
XM_036965048.1 mRNA upstream 427002 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 833315 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 853115 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 906632 46978103 ~ 47003404 (+) False rab30
XM_036965512.1 mRNA downstream 490020 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 549216 48460449 ~ 48624448 (+) True gab2
XM_036964717.1 mRNA downstream 722139 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 722139 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 1178650 49089883 ~ 49186113 (+) False trpc6b
TU2389353 other upstream 45207 47854106 ~ 47864829 (+) True G2088870
TU2389165 other upstream 372091 47532422 ~ 47537945 (+) True G2088732
TU2389161 other upstream 381488 47525440 ~ 47528548 (+) True G2088729
TU2387877 other upstream 871633 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 881473 47027119 ~ 47028563 (+) True G2087865
TU2389529 other downstream 276976 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 276976 48188209 ~ 48191362 (+) False G2089020
TU2389531 other downstream 277261 48188494 ~ 48191362 (+) True G2089020
TU2389657 other downstream 521245 48432478 ~ 48455486 (+) True G2089124
TU2390619 other downstream 1015742 48926975 ~ 48927292 (+) True G2089906

Expression Profile