RNA id: TU2389404


Basic Information

Item Value
RNA id TU2389404
length 314
lncRNA type intronic
GC content 0.56
exon number 2
gene id G2088913
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47935484 ~ 47935821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGTTTGTGAGACAACCATCAGACCTCCCTCGCAGCCTGGAGCACCATGCCAAACAACAGACCTCGCTAGCGGCCTGGAGCACCATGCCATGGGCCCaaaaacacaacaacatgttTCACATGTTTCACTTGCTCCtatctcagccccagtctcagctccagtctcacctccagtctcagccccagtctcaccTCCAGTCTCACCTCCAGTCTCAGCTCCAGTCTCAGCTCCAGTCTCAGCTCCAGTCTCAGCTTCAGTCTCAGCTCTAGTCTCAGCTCCAGTCTCAACCCCGATCTCAGCTCTAGTCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389403 lncRNA upstream 2857 47932258 ~ 47932627 (+) True G2088912
TU2389394 lncRNA upstream 18814 47916358 ~ 47916670 (+) True G2088905
TU2389389 lncRNA upstream 24251 47910036 ~ 47911233 (+) True G2088901
TU2389367 lncRNA upstream 55200 47877498 ~ 47880284 (+) True G2088880
TU2389342 lncRNA upstream 94733 47840237 ~ 47840751 (+) True G2088860
TU2389431 lncRNA downstream 79027 48014848 ~ 48015348 (+) True G2088939
TU2389439 lncRNA downstream 90500 48026321 ~ 48026972 (+) True G2088946
TU2389480 lncRNA downstream 132102 48067923 ~ 48068257 (+) True G2088972
TU2389502 lncRNA downstream 176839 48112660 ~ 48113241 (+) True G2088994
TU2389515 lncRNA downstream 209619 48145440 ~ 48146026 (+) True G2089007
XM_036965048.1 mRNA upstream 452450 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 858763 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 878563 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 932080 46978103 ~ 47003404 (+) False rab30
XM_036965512.1 mRNA downstream 465432 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 524628 48460449 ~ 48624448 (+) True gab2
XM_036964717.1 mRNA downstream 697551 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 697551 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 1154062 49089883 ~ 49186113 (+) False trpc6b
TU2389353 other upstream 70655 47854106 ~ 47864829 (+) True G2088870
TU2389165 other upstream 397539 47532422 ~ 47537945 (+) True G2088732
TU2389161 other upstream 406936 47525440 ~ 47528548 (+) True G2088729
TU2387877 other upstream 897081 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 906921 47027119 ~ 47028563 (+) True G2087865
TU2389529 other downstream 252388 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 252388 48188209 ~ 48191362 (+) False G2089020
TU2389531 other downstream 252673 48188494 ~ 48191362 (+) True G2089020
TU2389657 other downstream 496657 48432478 ~ 48455486 (+) True G2089124
TU2390619 other downstream 991154 48926975 ~ 48927292 (+) True G2089906

Expression Profile