RNA id: TU2389533


Basic Information

Item Value
RNA id TU2389533
length 204
lncRNA type intronic
GC content 0.51
exon number 2
gene id G2089021
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48189617 ~ 48189955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggtatggtagtaggtgcctttgaacaggggtatggtactaggtgcctttgaacaggggtatggtagtaggtgcctttgaacaggggtatggtactaggtgcctttgaacggggtatggtagtaggtgcctttgaacggggtatggtagtaggtgcctttgaacgggggtatggtagtaggtacctttgaacggggtatggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389515 lncRNA upstream 43591 48145440 ~ 48146026 (+) True G2089007
TU2389502 lncRNA upstream 76376 48112660 ~ 48113241 (+) True G2088994
TU2389480 lncRNA upstream 121360 48067923 ~ 48068257 (+) True G2088972
TU2389439 lncRNA upstream 162645 48026321 ~ 48026972 (+) True G2088946
TU2389431 lncRNA upstream 174269 48014848 ~ 48015348 (+) True G2088939
TU2389539 lncRNA downstream 20939 48210894 ~ 48211664 (+) True G2089027
TU2389541 lncRNA downstream 24083 48214038 ~ 48214336 (+) True G2089029
TU2389556 lncRNA downstream 42666 48232621 ~ 48234037 (+) True G2089043
TU2389559 lncRNA downstream 43088 48233043 ~ 48235002 (+) True G2089045
TU2389560 lncRNA downstream 47243 48237198 ~ 48238048 (+) True G2089046
XM_036965048.1 mRNA upstream 706583 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 1112896 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 1132696 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 1186213 46978103 ~ 47003404 (+) False rab30
XM_036965512.1 mRNA downstream 211298 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 270494 48460449 ~ 48624448 (+) True gab2
XM_036964717.1 mRNA downstream 443417 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 443417 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 899928 49089883 ~ 49186113 (+) False trpc6b
TU2389353 other upstream 324788 47854106 ~ 47864829 (+) True G2088870
TU2389165 other upstream 651672 47532422 ~ 47537945 (+) True G2088732
TU2389161 other upstream 661069 47525440 ~ 47528548 (+) True G2088729
TU2387877 other upstream 1151214 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 1161054 47027119 ~ 47028563 (+) True G2087865
TU2389657 other downstream 242523 48432478 ~ 48455486 (+) True G2089124
TU2390619 other downstream 737020 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 868050 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 1122788 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 1133214 49323169 ~ 49323603 (+) True LOC118944717

Expression Profile