RNA id: TU2389541


Basic Information

Item Value
RNA id TU2389541
length 225
lncRNA type intronic
GC content 0.36
exon number 2
gene id G2089029
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48214038 ~ 48214336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaaagggtctgaatactcatgtaaatgtgatatttcagtttttatttgtaacaaattagcaaaaatgtattgtcattatggggaattgtgaaTTGTGACCTACAGAGGTGGTATAGTAATGTACTTCCTGAGTGACTTACAGAGGTGGTATAGTAATGTACTTCCTGAGTGACCTACAGAGGTGTTATAGTAATGTACTTCCTGAGTGACCTACAGAGGTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389539 lncRNA upstream 2374 48210894 ~ 48211664 (+) True G2089027
TU2389533 lncRNA upstream 24083 48189617 ~ 48189955 (+) True G2089021
TU2389515 lncRNA upstream 68012 48145440 ~ 48146026 (+) True G2089007
TU2389502 lncRNA upstream 100797 48112660 ~ 48113241 (+) True G2088994
TU2389480 lncRNA upstream 145781 48067923 ~ 48068257 (+) True G2088972
TU2389556 lncRNA downstream 18285 48232621 ~ 48234037 (+) True G2089043
TU2389559 lncRNA downstream 18707 48233043 ~ 48235002 (+) True G2089045
TU2389560 lncRNA downstream 22862 48237198 ~ 48238048 (+) True G2089046
TU2389605 lncRNA downstream 102920 48317256 ~ 48317502 (+) True G2089081
TU2389621 lncRNA downstream 144326 48358662 ~ 48359011 (+) True G2089096
XM_036965048.1 mRNA upstream 731004 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 1137317 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 1157117 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 1210634 46978103 ~ 47003404 (+) False rab30
XM_036965512.1 mRNA downstream 186917 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 246113 48460449 ~ 48624448 (+) True gab2
XM_036964717.1 mRNA downstream 419036 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 419036 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 875547 49089883 ~ 49186113 (+) False trpc6b
TU2389529 other upstream 22676 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 22676 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 22676 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 349209 47854106 ~ 47864829 (+) True G2088870
TU2389165 other upstream 676093 47532422 ~ 47537945 (+) True G2088732
TU2389657 other downstream 218142 48432478 ~ 48455486 (+) True G2089124
TU2390619 other downstream 712639 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 843669 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 1098407 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 1108833 49323169 ~ 49323603 (+) True LOC118944717

Expression Profile