RNA id: TU2389765


Basic Information

Item Value
RNA id TU2389765
length 279
lncRNA type intronic
GC content 0.40
exon number 3
gene id G2089205
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48614439 ~ 48616723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGAGGTATATCTACAGCCCAGAGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTAGGAAGTAGCTGAGGTATATCTACAGCCCAGAGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTGTATCAGGGTTACTATGAAGTATCTGAGGTATATCAGGGTTACTATGAAGTATCTGAGGTATATCTACAGCCCAGAGTAACTATGAAGTATCTGAGGTATATCTAGAGCCCAGGGTTTATATGAAGTATCTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389756 lncRNA upstream 13651 48600374 ~ 48600788 (+) True G2089200
TU2389745 lncRNA upstream 35435 48577968 ~ 48579004 (+) True G2089190
TU2389723 lncRNA upstream 68440 48544446 ~ 48545999 (+) True G2089174
TU2389722 lncRNA upstream 72496 48541670 ~ 48541943 (+) True G2089173
TU2389714 lncRNA upstream 93235 48520906 ~ 48521204 (+) True G2089165
TU2389761 lncRNA downstream 94 48616817 ~ 48617469 (+) True G2089204
TU2389767 lncRNA downstream 1776 48618499 ~ 48618907 (+) True G2089207
TU2389768 lncRNA downstream 3222 48619945 ~ 48620450 (+) True G2089208
TU2389782 lncRNA downstream 35629 48652352 ~ 48652935 (+) True G2089220
TU2389808 lncRNA downstream 66966 48683689 ~ 48684256 (+) False G2089243
XM_036965512.1 mRNA upstream 156000 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 295354 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 295354 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 1131405 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 1537718 47074530 ~ 47076721 (+) True LOC110513068
XM_036964717.1 mRNA downstream 16649 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 16649 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 473160 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 584725 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 706290 49323013 ~ 49323866 (+) False LOC118944717
TU2389657 other upstream 158953 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 423077 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 423077 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 423077 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 749610 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 310252 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 441282 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 696020 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 706446 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 716724 49333447 ~ 49334183 (+) True G2090103

Expression Profile