RNA id: TU2389767


Basic Information

Item Value
RNA id TU2389767
length 343
lncRNA type intronic
GC content 0.50
exon number 2
gene id G2089207
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48618499 ~ 48618907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAAACAGTACCCTCCACAGGGCAATGTcctcaatcactgccctgggacattgggatattttttttagaccagaggaaagagtgcctcctactggccctccaacaccacttccagcagcatctggtctcccatccagggactgaccaggaccaacccttcttagcttcagaagcaagccagcagtagtatgcagggtggtaatgctgctgaccaggaccaaccctgcttagcttcagaagcaagccagcagtggtatgcagggtggtatgctggtaGAGAACAGAAGAAGAAGTGGACGAATAAACACACTCATTCAGGAACAAGTGTATGCATTTGAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389763 lncRNA upstream 1030 48615267 ~ 48617469 (+) False G2089204
TU2389761 lncRNA upstream 1030 48616817 ~ 48617469 (+) True G2089204
TU2389765 lncRNA upstream 1776 48614439 ~ 48616723 (+) True G2089205
TU2389760 lncRNA upstream 2492 48615267 ~ 48616007 (+) False G2089204
TU2389762 lncRNA upstream 2492 48615574 ~ 48616007 (+) False G2089204
TU2389768 lncRNA downstream 1038 48619945 ~ 48620450 (+) True G2089208
TU2389782 lncRNA downstream 33445 48652352 ~ 48652935 (+) True G2089220
TU2389808 lncRNA downstream 64782 48683689 ~ 48684256 (+) False G2089243
TU2389809 lncRNA downstream 64837 48683744 ~ 48684256 (+) True G2089243
TU2389810 lncRNA downstream 65636 48684543 ~ 48686439 (+) True G2089244
XM_036965512.1 mRNA upstream 160060 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 299414 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 299414 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 1135465 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 1541778 47074530 ~ 47076721 (+) True LOC110513068
XM_036964717.1 mRNA downstream 14465 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 14465 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 470976 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 582541 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 704106 49323013 ~ 49323866 (+) False LOC118944717
TU2389657 other upstream 163013 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 427137 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 427137 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 427137 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 753670 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 308068 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 439098 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 693836 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 704262 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 714540 49333447 ~ 49334183 (+) True G2090103

Expression Profile