RNA id: TU2389782


Basic Information

Item Value
RNA id TU2389782
length 335
lncRNA type intronic
GC content 0.38
exon number 2
gene id G2089220
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48652352 ~ 48652935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctagaccaACCACCTGCACTGTCTAGACCAACCACCTGCACTGTCTAGACCaaccacCTGCACTGTCCAGACCAACCACCAATCACCTGCACTTTCTATAGTGCTTCATTAATGACTGTTGTCACATTCTGttgcataattcaacaagtgTATCAATAGCATGATACTGATTAATAACCAACAGCTTGGCTCTAGATTATATACatacatactttacattgttAATCACGTCAGACATAATATCACCATCATCCAAGTGTTCAATTTCAGAACCTAATTCCCTGTATTAAATTCaaacttttttttctccaaattcCACAGCAAATGAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389768 lncRNA upstream 31902 48619945 ~ 48620450 (+) True G2089208
TU2389767 lncRNA upstream 33445 48618499 ~ 48618907 (+) True G2089207
TU2389763 lncRNA upstream 34883 48615267 ~ 48617469 (+) False G2089204
TU2389761 lncRNA upstream 34883 48616817 ~ 48617469 (+) True G2089204
TU2389760 lncRNA upstream 36345 48615267 ~ 48616007 (+) False G2089204
TU2389808 lncRNA downstream 30754 48683689 ~ 48684256 (+) False G2089243
TU2389809 lncRNA downstream 30809 48683744 ~ 48684256 (+) True G2089243
TU2389810 lncRNA downstream 31608 48684543 ~ 48686439 (+) True G2089244
TU2389824 lncRNA downstream 62654 48715589 ~ 48716164 (+) True G2089258
TU2389826 lncRNA downstream 66984 48719919 ~ 48720313 (+) True G2089260
XM_036964907.1 mRNA upstream 27904 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 193913 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 333267 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 333267 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 1169318 47482390 ~ 47483034 (+) True LOC118944690
XM_036965696.1 mRNA downstream 436948 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 548513 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 670078 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1812948 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1812982 50465917 ~ 50476608 (+) False LOC110508133
TU2389657 other upstream 196866 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 460990 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 460990 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 460990 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 787523 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 274040 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 405070 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 659808 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 670234 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 680512 49333447 ~ 49334183 (+) True G2090103

Expression Profile