RNA id: TU2389810


Basic Information

Item Value
RNA id TU2389810
length 321
lncRNA type intronic
GC content 0.35
exon number 2
gene id G2089244
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48684543 ~ 48686439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaggggttagaatgttatagtagtagtagtagtagtagaaggggttagaatgttatagtagtagtagtagtagaaggggttagaatgttatagttgtagtagtagtagaaggggttagaatgttatggtagtagtagaaggggttagaatgttatggtagtagtagaaggggttagaatgttatagtagtagtagtagtagtagtagtagaaggggttagaatgttatagtagtaatagaaggggttagaatgttatagtagtagtagtagaaggggttagaatgttatagtagtagtagtagtagaaggggttagaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389808 lncRNA upstream 287 48683689 ~ 48684256 (+) False G2089243
TU2389809 lncRNA upstream 287 48683744 ~ 48684256 (+) True G2089243
TU2389782 lncRNA upstream 31608 48652352 ~ 48652935 (+) True G2089220
TU2389768 lncRNA upstream 64093 48619945 ~ 48620450 (+) True G2089208
TU2389767 lncRNA upstream 65636 48618499 ~ 48618907 (+) True G2089207
TU2389824 lncRNA downstream 29150 48715589 ~ 48716164 (+) True G2089258
TU2389826 lncRNA downstream 33480 48719919 ~ 48720313 (+) True G2089260
TU2389827 lncRNA downstream 34277 48720716 ~ 48721029 (+) True G2089261
TU2389844 lncRNA downstream 59345 48745784 ~ 48748130 (+) True G2089274
TU2389775 lncRNA downstream 83988 48770427 ~ 48771174 (+) True G2089213
XM_036964907.1 mRNA upstream 60095 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 226104 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 365458 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 365458 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 1201509 47482390 ~ 47483034 (+) True LOC118944690
XM_036965696.1 mRNA downstream 403444 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 515009 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 636574 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1779444 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1779478 50465917 ~ 50476608 (+) False LOC110508133
TU2389657 other upstream 229057 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 493181 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 493181 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 493181 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 819714 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 240536 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 371566 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 626304 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 636730 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 647008 49333447 ~ 49334183 (+) True G2090103

Expression Profile