RNA id: TU2389844


Basic Information

Item Value
RNA id TU2389844
length 602
lncRNA type intronic
GC content 0.50
exon number 3
gene id G2089274
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48745784 ~ 48748130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtttGAAGGGAGTGGTctaaccagagacagagagacaggctgtttGAAGGGAGTGTTCtaactagagacagagagacaggctgtttGAAGGGAGTGTTctaaccagagacagagagacaggctgtgtgaagggaaGGTTCtaactagagacagagagacaggctgtgtgaagggagtggtctaactagagacagagagacaggctgtgtgaagggagggttctaaccagagacagagagacaggctgtgtgaagggagtggtctaactagagacagagagacaggctgtttGAAGGGAGTGGTCTAaccagagaccgagagacaggcTGTTTGAAGGCAGTGTTctaaccagagacagagagacaggctgtgtgaagggaaGGTTCtaactagagacagagagacaggctgtgtgaagggagtggtctaactagagacagagagacaggctgtgtgaagggagtggtctaaccagagacagagagacaggctgtttGAAGGGAGTGTTctaaccagagacagagagacaggctgtgtgaagggaaGGTTCtaactagagacagagagacaggctgtgtgaagggagtggtctaactaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389827 lncRNA upstream 24755 48720716 ~ 48721029 (+) True G2089261
TU2389826 lncRNA upstream 25471 48719919 ~ 48720313 (+) True G2089260
TU2389824 lncRNA upstream 29620 48715589 ~ 48716164 (+) True G2089258
TU2389810 lncRNA upstream 59345 48684543 ~ 48686439 (+) True G2089244
TU2389808 lncRNA upstream 61528 48683689 ~ 48684256 (+) False G2089243
TU2389775 lncRNA downstream 22297 48770427 ~ 48771174 (+) True G2089213
TU2389773 lncRNA downstream 25934 48774064 ~ 48774643 (+) True zmp:0000001236
TU2390612 lncRNA downstream 169128 48917258 ~ 48918081 (+) True G2089900
TU2390615 lncRNA downstream 174993 48923123 ~ 48923343 (+) True G2089902
TU2390616 lncRNA downstream 175451 48923581 ~ 48923815 (+) True G2089903
XM_036964907.1 mRNA upstream 121336 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 287345 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 426699 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 426699 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 1262750 47482390 ~ 47483034 (+) True LOC118944690
XM_036965696.1 mRNA downstream 341753 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 453318 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 574883 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1717753 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1717787 50465917 ~ 50476608 (+) False LOC110508133
TU2389657 other upstream 290298 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 554422 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 554422 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 554422 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 880955 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 178845 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 309875 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 564613 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 575039 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 585317 49333447 ~ 49334183 (+) True G2090103

Expression Profile