RNA id: TU2390612


Basic Information

Item Value
RNA id TU2390612
length 317
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2089900
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48917258 ~ 48918081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCAATACAGACAAAACCGTCAGTATAGTCAACACAGACAACACCGTCAACACAGACAACACCGTCAGTATAGTCAACACAGACAACACCGTCAGTATAGTCAACACAGACAACACCGTCAGTATAGTcaacacagacaacacagtcATCGCAGTCTACATAAACATCAAGGTCAACAAATATATATCACAGTCAGCACAGTAATCACAGTCAACATAGTAATCACAGtcaacacagtaaagacagtcaacacagtaaagacagttaacacagtaaagacagtcaacatagtgatcacagtcaacacagtaaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389773 lncRNA upstream 142615 48774064 ~ 48774643 (+) True zmp:0000001236
TU2389775 lncRNA upstream 146084 48770427 ~ 48771174 (+) True G2089213
TU2389844 lncRNA upstream 169128 48745784 ~ 48748130 (+) True G2089274
TU2389827 lncRNA upstream 196229 48720716 ~ 48721029 (+) True G2089261
TU2389826 lncRNA upstream 196945 48719919 ~ 48720313 (+) True G2089260
TU2390615 lncRNA downstream 5042 48923123 ~ 48923343 (+) True G2089902
TU2390616 lncRNA downstream 5500 48923581 ~ 48923815 (+) True G2089903
TU2390617 lncRNA downstream 5781 48923862 ~ 48924312 (+) True G2089904
TU2390635 lncRNA downstream 109007 49027088 ~ 49027310 (+) True G2089922
TU2390640 lncRNA downstream 127068 49045149 ~ 49045375 (+) True G2089927
XM_036964717.1 mRNA upstream 142577 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA upstream 142577 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964907.1 mRNA upstream 292810 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 458819 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 598173 47640597 ~ 48319085 (+) False tenm4
XM_036965696.1 mRNA downstream 171802 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 283367 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 404932 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1547802 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1547836 50465917 ~ 50476608 (+) False LOC110508133
TU2389657 other upstream 461772 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 725896 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 725896 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 725896 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 1052429 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 8894 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 139924 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 394662 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 405088 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 415366 49333447 ~ 49334183 (+) True G2090103

Expression Profile