RNA id: TU2390644


Basic Information

Item Value
RNA id TU2390644
length 224
lncRNA type intronic
GC content 0.38
exon number 1
gene id G2089931
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49052146 ~ 49052369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctataaggtagtagttttggaattgttagctagattacttggtggttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgatttgagctagtggaaagccttcccagaagaatggaggctgttatagcagaaatgttccaacatctacttgaaag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390643 lncRNA upstream 99 49051765 ~ 49052047 (+) True G2089930
TU2390640 lncRNA upstream 6771 49045149 ~ 49045375 (+) True G2089927
TU2390635 lncRNA upstream 24836 49027088 ~ 49027310 (+) True G2089922
TU2390617 lncRNA upstream 127834 48923862 ~ 48924312 (+) True G2089904
TU2390616 lncRNA upstream 128331 48923581 ~ 48923815 (+) True G2089903
TU2390652 lncRNA downstream 11721 49064090 ~ 49064458 (+) True G2089937
TU2390728 lncRNA downstream 26084 49078453 ~ 49078657 (+) True G2089983
TU2390746 lncRNA downstream 46935 49099304 ~ 49099878 (+) True G2090001
TU2390755 lncRNA downstream 57058 49109427 ~ 49109670 (+) True G2090010
TU2390770 lncRNA downstream 70362 49122731 ~ 49122979 (+) True G2090025
XM_036964717.1 mRNA upstream 277465 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA upstream 277465 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964907.1 mRNA upstream 427698 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 593707 48401253 ~ 48458439 (+) False nars2
XM_036964776.1 mRNA upstream 733061 47640597 ~ 48319085 (+) True tenm4
XM_036965696.1 mRNA downstream 37514 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 149079 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 270644 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1413514 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1413548 50465917 ~ 50476608 (+) False LOC110508133
TU2390619 other upstream 124854 48926975 ~ 48927292 (+) True G2089906
TU2389657 other upstream 596660 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 860784 48188209 ~ 48191362 (+) False G2089020
TU2390650 other downstream 5636 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 260374 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 270800 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 281078 49333447 ~ 49334183 (+) True G2090103
TU2391337 other downstream 732758 49785127 ~ 49788805 (+) True G2090508

Expression Profile