RNA id: TU2390728


Basic Information

Item Value
RNA id TU2390728
length 205
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2089983
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49078453 ~ 49078657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACTATAAAACCCACTTCCTACAAAATCTACATTAAGTCAGAGAACGCCGGGACAGAGTCCCCACGTTGGAATGACTACAATTCTATTGAGCATTAGACCATACAGCTGTAGTTTTGGTTACATGGCTGGAAAAGTCTGAGACAATCGATCacgacagaataagagcaaatcttagacgtactagtctgcagctagaaatgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390652 lncRNA upstream 13995 49064090 ~ 49064458 (+) True G2089937
TU2390644 lncRNA upstream 26084 49052146 ~ 49052369 (+) True G2089931
TU2390643 lncRNA upstream 26406 49051765 ~ 49052047 (+) True G2089930
TU2390640 lncRNA upstream 33078 49045149 ~ 49045375 (+) True G2089927
TU2390635 lncRNA upstream 51143 49027088 ~ 49027310 (+) True G2089922
TU2390746 lncRNA downstream 20647 49099304 ~ 49099878 (+) True G2090001
TU2390755 lncRNA downstream 30770 49109427 ~ 49109670 (+) True G2090010
TU2390770 lncRNA downstream 44074 49122731 ~ 49122979 (+) True G2090025
TU2390776 lncRNA downstream 62113 49140770 ~ 49141054 (+) True G2090031
TU2390778 lncRNA downstream 64302 49142959 ~ 49143272 (+) True trpc6b
XM_036964717.1 mRNA upstream 303772 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA upstream 303772 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964907.1 mRNA upstream 454005 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 620014 48401253 ~ 48458439 (+) False nars2
XM_036964776.1 mRNA upstream 759368 47640597 ~ 48319085 (+) True tenm4
XM_036965696.1 mRNA downstream 11226 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 122791 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 244356 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1387226 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1387260 50465917 ~ 50476608 (+) False LOC110508133
TU2390650 other upstream 19558 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 151161 48926975 ~ 48927292 (+) True G2089906
TU2389657 other upstream 622967 48432478 ~ 48455486 (+) True G2089124
TU2389530 other upstream 887091 48188209 ~ 48191362 (+) False G2089020
TU2390846 other downstream 234086 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 244512 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 254790 49333447 ~ 49334183 (+) True G2090103
TU2391337 other downstream 706470 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 1003406 50082063 ~ 50087691 (+) True G2090638

Expression Profile