RNA id: TU2390815


Basic Information

Item Value
RNA id TU2390815
length 234
lncRNA type intronic
GC content 0.50
exon number 1
gene id G2090065
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49225465 ~ 49225698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggtaggcttgattaccaacaacgacgagacggcctacagggaggaggtgagggccctcggagtgtggtgtcaggaaaataacctcacactcaacgtcaacaaaacttaggagatgattgtggacttcaggaaacagcagagggaacacccccctatccacatcgatggaacagtagtggagagggtagcaagttttaagttcctcggcatacacatcacagacaaactgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390784 lncRNA upstream 56131 49167441 ~ 49169334 (+) True G2090037
TU2390781 lncRNA upstream 62300 49162964 ~ 49163165 (+) True G2090036
TU2390779 lncRNA upstream 71592 49147834 ~ 49153873 (+) True G2090034
TU2390778 lncRNA upstream 82193 49142959 ~ 49143272 (+) True trpc6b
TU2390776 lncRNA upstream 84411 49140770 ~ 49141054 (+) True G2090031
TU2390816 lncRNA downstream 538 49226236 ~ 49226471 (+) True G2090066
TU2390828 lncRNA downstream 23209 49248907 ~ 49249491 (+) True G2090077
TU2390830 lncRNA downstream 24904 49250602 ~ 49250839 (+) True G2090079
TU2390836 lncRNA downstream 36362 49262060 ~ 49262439 (+) True G2090085
TU2390837 lncRNA downstream 36869 49262567 ~ 49262974 (+) True G2090086
XM_036965696.1 mRNA upstream 39352 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 450784 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA upstream 450784 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964907.1 mRNA upstream 601017 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 767026 48401253 ~ 48458439 (+) False nars2
XR_005040013.1 mRNA downstream 97315 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1240185 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1240219 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 1241367 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 1241397 50467095 ~ 50476608 (+) True LOC110508133
TU2390650 other upstream 166570 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 298173 48926975 ~ 48927292 (+) True G2089906
TU2389657 other upstream 769979 48432478 ~ 48455486 (+) True G2089124
TU2389530 other upstream 1034103 48188209 ~ 48191362 (+) False G2089020
TU2390846 other downstream 87045 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 97471 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 107749 49333447 ~ 49334183 (+) True G2090103
TU2391337 other downstream 559429 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 856365 50082063 ~ 50087691 (+) True G2090638

Expression Profile