RNA id: TU2390855


Basic Information

Item Value
RNA id TU2390855
length 253
lncRNA type intronic
GC content 0.40
exon number 1
gene id G2090100
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49321853 ~ 49322105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGGGTTTGTAAAGCAtctacgtaggtctatgggttagtatatatacacactatagactcactagactatatacacactcagaCTACTATGTTTAGTAAGGCATCTACGTCGGTCTATGGGTTATGAAGGGTTTGTAAAGTAtctacgtaggtctatgggtctacgtaggtctatgggttatgaatggtttGTAAAGCATCTACGTAGGTTTATGGGtctacgtaggtctatgggtTATGAAGGGTTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390848 lncRNA upstream 4762 49316628 ~ 49317091 (+) True G2090093
TU2390837 lncRNA upstream 58879 49262567 ~ 49262974 (+) True G2090086
TU2390836 lncRNA upstream 59414 49262060 ~ 49262439 (+) True G2090085
TU2390830 lncRNA upstream 71014 49250602 ~ 49250839 (+) True G2090079
TU2390828 lncRNA upstream 72362 49248907 ~ 49249491 (+) True G2090077
TU2390857 lncRNA downstream 11058 49333163 ~ 49333394 (+) True G2090102
TU2390859 lncRNA downstream 12170 49334275 ~ 49334820 (+) True G2090104
TU2390860 lncRNA downstream 12783 49334888 ~ 49337253 (+) True G2090105
TU2390861 lncRNA downstream 16432 49338537 ~ 49338934 (+) True G2090106
TU2390863 lncRNA downstream 18792 49340897 ~ 49341159 (+) True G2090108
XM_036965366.1 mRNA upstream 55218 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 135740 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 547172 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA upstream 547172 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964907.1 mRNA upstream 697405 48460449 ~ 48624448 (+) True gab2
XR_005040013.1 mRNA downstream 908 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1143778 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1143812 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 1144960 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 1144990 50467095 ~ 50476608 (+) True LOC110508133
TU2390846 other upstream 5627 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 262958 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 394561 48926975 ~ 48927292 (+) True G2089906
TU2389657 other upstream 866367 48432478 ~ 48455486 (+) True G2089124
TU2389531 other upstream 1130491 48188494 ~ 48191362 (+) True G2089020
TU2390856 other downstream 1064 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 11342 49333447 ~ 49334183 (+) True G2090103
TU2391337 other downstream 463022 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 759958 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 1030263 50352368 ~ 50353167 (+) True G2091093

Expression Profile