RNA id: XM_021588910.2


Basic Information

Item Value
RNA id XM_021588910.2
length 7376
RNA type mRNA
GC content 0.58
exon number 19
gene id LOC110508399
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 6416696 ~ 6456082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCACACACTCCATCTGATTGGTCGAGTAGGCGGGCCATTGActctgtggctgtggtaactagagaCGGCTCCACGGTTCATGTTTTCTAGCATTGTTGTACTTGCTCCCAAATGGATTTTTCTGCATAAACGGTTCCAGCCTTCCCCACGCCAGTCCCACTAAGAGGGGTGGATGGCACATCAACACCCCCCATCAGAGCTTCCCCAGTGGACAGCAGTCCCAGATGGGGACCCTGACTCAGATTCTGACCAGGACTCTGGAGTTGGAGAGGATGCTGGTGTTCACTGGCAGGAGGGAGTTGGAGAGCGGGATTTCAACATCTTTGTTGCCTTTCGGGGAAACATGGATGACGAGGACTTCCAAGAGAAACTTGACAACATACTTAACAGGATGCCTAGTATGCTTGAATTGGACTCAGAGAGACTGCAGCTCCAGCATGTGGAGCCATGGAACAGTGTGCGAGTCACCTTTAACATTCCTCGGGACGCGGCAGAGCGCCTCAGGCTGCTGGCCCAGAACAACCAGCAGCAGCTCCGAGACCTGGGCATCCTCTCTGTACAGATAGAGGGTGAAGGAGCCATAAACGTGGCCATTGGGCAGAATAGAGGTCAGGAGGTCAGGGTAAATGGACCAATCGGTGCGTCCGGTCAGATGAGGATGGATTTGGGATTCCCGGGACAAGCAGGCCCAGGAGGCATGAGAATGAGCAACCCGTCGATGGTACCCCCTTGCCCCAGTATGTCTGGACAGGCCATGGTTCCCGGCAGCAGTGGACAGATGCACCCCAGAGCCGCCAGACCCCCCTCACAGACTGATGCGATGGGCTCAATGATGTCCTTGCAGCAGCAGCTTCAGCATCCTCAGGCTGGCCCCTACGGCCAAGGACCCATACCCCCCCAGGCAGCTCACCACATGCAGACCATGCAGGTGGGGAGGCAGCTCAACCCGGCTGCCCTCCATCAgctgcagcaacagcagcagcaggcccagCAACAAGCTCAGCTCTCCCAGCTTGGTGTCCCCCGTCCCCCCTTCAACCCCTCTGGCCAGATGCCTGTACCCTCCGGCTGGAACCAGCTCCCCTCAGGGGTCCTCCAGCCGCCGCCAGCCCAGGGAGGACCCATGGGCTCAGGCTGGAGGAAGGCCCCTCCCCAAGCTCAAATGACTCAACGTCCCCCCTCCCTGGCTATGGTCCAGACCCCCAGCCACCCTCCACCTCCGTACCCATTTGGTAGCCAGCAGGCTGGCCAGGTGTTTAATGCTATGGTGCAGGGGCAGCTCCAGCAGCAGCCAGGGGCTGGTCAGTTTGCAGCCCCCCAGCCTAAAGGTCCCCAGGGTGGGCCTGGAGGGGTGGCAGGACCCCTTAGACCTCCACCACCTCTGCCTCCTTCAGCAGGGCCTCAGGGAAACCTCACAGCCAAGTCTCCTGGGTCTTCACCTTCCCTCTTCCAGCAGGGTTCTCCAGGGACTCCTCCCATGATGGGGCAGGGTCAGGCCCAGCTGGGACCGAGACCCATGACCCCACAGGGTTTCTCTCAAGGGGTAGGCTCACCGGGCAGGGCGATACTGGGACAGCAGGGTAACCTGCAGCAAGGGTTCATGGTAATGCCCCAAAATGGGCAGGCTGGACCTCCGGTTCatcaaggaggaatgggagGCATGCCCAATCGCCTGCCCATGGGGTTTCCTAACGTCCCAGGGAACCAGAACTTTGTCGAGGGTCAGGTGACTAGCGCCCCAGGAACCCCTGGGGGAGGAGCCAATCCCCAGCTCCAGAGCAGCCAGGTTATGGCACACACAGGAGCCCAGTCGTCAGCCTCCACCCCCAACAACATGCAAGGTCCGTGCCACTCCCAGCCCAATGTCATGGGCCTCCACGGTGGCATGGCCGGCCAGCCCCCAGGCACCACCTCAGGCCCCAGTATGGGCCAGCCCAGCCTCCAGAACCAGATGATGGGCCTCCAGGGCCAGCCTGTGTCCTCGTCCCCCAGCCAGATGGTCCAGGGTGGGGGTCCGGGGCAAACGGTCCTCTCCAGACCCCTCAACccagggcagagaggaggcatGACCCCACCCAAGCAGCTGGTGCCCCAGCAGGGCCAGGGGGTGATGCACAGCCAGGTGGTTGGAGGGCAGGGGCACCAGGCGATGCTCCTACAACAGCAGcatcagcagcaacaacagcaaaaCTCCATGATGGAACAGATGCAAGGAAACAAACATGCGTTTGGGGTGAAAGGTCAAGCTGGGGTCATGCGGGGTCCGTCTCCTAACGGACCCGGTAACATGTCTCAGTTCCAGCAAGCTCAGGTGggccaacagcagcagcagcagcagcagcagcaaatggCTCAGctccaacaacagcagcagcaacaccaGCTACAACAACATCAACAGATGACCCAGCAGCAGCCCCAACAGGTCCCCATGGGTGGCAACCCAAACCAGGTCATGGGTATGCACAGTCAGATGAGACTCCCCAGTGGTCATCCTCTGGTCCAGCAGCAgctacagcagcagcagctccaACAACAGAAACAACAAGCCATTCtacaacagcagcaacaacaggcGACGCAGCAACACCCACACGCTCTCGGAGACCCCAGTGGCTGTACAGGCGACATGGGCAGTGTCCAACAGATGCTCCAGGACATACAGGGTCAGCAACAGCAGCAAGGCATGACAGGAATTGGAGCCCCCCAGCACATGCAGGTGGGCAACGGCCACTTCCCGGGTCACGGGATGAACTTCAATCCCCAGTTCGGGGGTCAAATGCCTATGAGTGGGTTGTGCGCTCAGGCAGGGGGTTTTCCAGTGAACAAGGACGTGACGCTCACCAGTCCTCTCCTGgtcaacctgctccagagtgacATCTCGGCTAGTCAGTTTGGACCTGGGGGGAAGCAGGGGGCTGGAGGACCTGGCCAGGCCAAACCCAAGAAGAAGAAACCACCACGCAAGAAGAAGCCCAAAGTAGGGGAGGGACAGCAGCCGATGGAGGGGCTAGGGGGTCTGGATGTGGGTGTTGGCCTGGAGGACCCAGAGCTGCCAGCACTGAGTGGGGAACAGGGGGTGGGCATGGACCATTCTGGACCCAAACTTTCAGACTTCACCAACAGGCCTGCAGGTTTCCCAGGTCAGCCTGGAGACCAGAGAGTCCTACCGCAGGTGCCTATGCAGTTCATGCAGCAGCATCAACAACAGCAGCAtattcagcagcagcagcagcatcagcagcAGCTGCAACAACAGCAgctacagcaacaacagcaaatgcaacaacagcagcaacagaTGCAACAGCAGATGCAGGGAATGCAAGTTCCTCCAGGACAGCAACAGGGGGTGGCTGGAGCTCTGGGTCAGACTCAAGGCCAGCCACAGATGCATCCTCATcatctacaacaacaacaaaagcagCAACAACCACACcatcaacagcagcagcagcagcaacaacagCAGATGGTCATGAAGATGCAGCAGGAGCAGGCTAAAAACCGGATGCCCCTCCATCCAGGTGGGCAGAACCCCCCCAGGGGCATGATGAACACCGGGGAGGCCCAGAGGATGCCTGGCACCCAGCAGGGCAACATGCCCGTCATGATCAACCTCCAGGGGCACGGAGGAGTGCCCCCCTCCCCAGACAAACCCAGAGGGATGCCCCTCATGGTCAACCCACAGATGACTGGGGCAGCCCGGCGGATGTCTCACCCTGAGGCAGGGCCTGGTTCCCAAGGAACGGGGGCTGAGGAGGCCCCTGGAGGTCCCAACTCACTACAGGACAGATCTGGAGGCCAGGAGATGGGGATGCAGTCTGGGAATGGAGCCCAACAGTTGGTGGTGAACCAGGGCACAAACGCCCACATGATGAAGCAGGGCCCCAGCCCCTCGCCCATGCCCCAGCACCCTGGAGCCAGTCCCCAGCAACAGATGCCCCCTCAGCCCCTGCAGGGTGGCCCCATGCCTGGCCTCCACTTCCCTAGCGTTGCCACCACCTCCCAGAGCTCCAGGCCCAAAACACCCAACCGGGCCAGTCCCAGGCCCTACCACCACCCTCTCACACCTACCAACCGTCCTCCCAGCACTGAGCCCTCTGAGATCAACCTCTCCCCTGAGAGGCTGAACGCCTCCATCGCAGGCCTGTTTCCCCCCAAGATCAACATCCCTCTACCACCCAGGCAGCCCAACCTCAGCCGGGGCTTTGAACAGCAGGGTGGGCTCAACCCCACCACTCTCAAAGCCATAGGGCAGGCCCCTCCCAGCCTAACTATGTCTAGCAACAATGGAAGTGGTGGAGGTAACTCTAACAATGGTCAGCAGTCTTTCCCTATAGGCAGTGGAGCGGCCAACTTGGGCCAAGGGAAACAGGACAAGCAGTCTGGAGGAGGGCAGGCTAAAAGGGCCAGTCCCAGTAACAGCCGCAGATCCAGCCCTGCCTCCAGCCGCAAATCCACTACCCCCAGCCCGGGGAGGCAGAAGGGGGCTAAGATTGCACTAACCTCCCCTCACCAGCAACACATCAACCCCCAGACAGGGCAGACCATGATGTTGAGCCCAACCCCAGTGCCTCCTAGCCCGGTCTCACTCCCACTCGCGGTTGGGGTGGGCCTGGATGCCCATCAGATCCAGAGCCCCTTCCAGGGGTTCCAGGATAACACAGCTGAGATGCCCAGGGAAGGGCAGGGAATGGCAGGTGTAGAGCAGCGGCAGATGCCCCAGCCTTTGAGGGAGCTCTCTGCCCCCCGGATGGCTAGCCTTCGTGTCCCAACTCCTCAGGAGGCTAAAGCTGGGCTTGAGCGCACAATGGTAGCAGGGGAGAGGCAGCCTGTACAGATGGCTCCTCAGCAGGAGTATGTATCTGTATATGAGGCCTCTCCTGCTCTCAGGGATGTTCCTACCTCCCTTAACCAGCTACTGGATAACACAGCCACCCCCAGCGTGCCTGCCAGGCCCACTCAGAGTGCTCCAGCTGGGGATACTGTCTACAAGGAGAGCACTAAAGCCTCCATAGATCAAGAGAACCCATCCAGTGCTTTTCAGAGCTTGGAAGTGGGGGATACTGCTGTtgctactactggtgctgctgtgAACGAGCCAGAAGCTAAACCCAAGCCCAGCTCAACCCCCTGCCCCAAACTCTCAAATCCAGCCAGTAGTCCTAATCTGCAGCCTAAAGGAAGCCCCAATCTTAATGCTAATCACAGCCCTAGCCCCAATCTAAACTCGACTGCTAGCCCCAACCCTACTCTAAACCCTGCTCCTAGTCTTCGTGTCAATGTGGGCGCTAGCCCCAACACAGCCACAGTCAGTCATAGTTGTCCCAGCCTCAACGTTTCCCCCAGGCCAAACTCTAACTCAAACCCTGCAGTTAGTCCCAAATTAATCCCCAGCCCTAAACCCCTGGCCAGTGTCTCCACAGTCCTGCAGATCCCTGCGTCCTCTGCCACCATCTCCCCCAACCAGATAACCGTGTTTGTCACCTCCAACCCTATCAGTTCCACCCCTCAGGCCCCCCCAGCCATCGTCTCCACTATGGTGGCCATGCCCAGTAAGAACATCAGACCACAGCAGCTCAGCCAGCAGACCACTGCCCCCCGGCCCCAATTCATTACCACGCCTGTGTTTATTAATACTGGTACCCCAATCTTCCAGGTCCCCGCTGCGTCTGTGGCCCCCAACACCACAATGGTGTCCCAGCCGATCACCATGGTAGGGCCCATACAGGTGTCCACAACTAATATCCAGCTGACCACCGCACCAACCCCGTCCCAAGGCTCTGCCTGGACCCAGGCTTCTGTGGTCAGTGTGGCCGGCACCCAGCCTGCCCGAACGCTAGTTGAGCAGGTCCAGATGGCCAGTAGACAGGCTTCCCCTGTTAGTAACTTGCCTCCTCCCCAGCAGCAAAGCCCTACCACTCCCAAACCAGAGACCTCTGGTGAGGCGCTCACCGGACAGAAATCTACCCCACCAGTTGGGCAGCCTTCCCGTCGTCCAAGCCCCTATCCCACAGCCTCTACGTTTGCCTCGTCTCCCTTCCAGCAGCCCCTAGGGTCCCCCTTTCCATGCTCCCCCTCCTTGGCTGCCCAGGGCAAGCCTTTCCAGGCTCCTGGCTCTGCACCAGTGAGCAGTCCACCAGATTCCCAGCAGGTTTCTAAGGAATGGCCAGCCCAGACTTTAGGGGGGGCTTACCAGCACCAGACAGGTCTGAACGCTGGGGGTGTGCCCATTCATACATCCCCTGCATCTCTCACCCAGACTGAGGCCACAGTGTCTGGAGCACAGACTCGGACTACTTCTGCTGCTGCTCCGAAAGTCACCACTACTCCTCCTCCCGTATCAGCTCCAACTCCTGTTCATGCTCAACCTGCTACACTAGCCCAGTCCCCTGTTCCTGctccaccagcccagtccccTGTTCCTGCTCCAGCCTCTAAACCTACCACCCCTCTGCCAGTCTCAGTCCCTGTCACCACCCCAATCACTACTACTGCCCCTGTTCCTACCACTGCTACATTTCTTGCTGATCTGGCTCCTCCTTCAGCCCCAGTCCTGATACCAAATCTGTCCCCATCTACATCTCCTGTTGTTGCCACCACTGGACCCTCCAACCCCCCCAGGGACTCCTCAGCCATATCCTCCCCAGCCATATCCTCCCCAGCGGCCCTTACCCCTACTGTGGCTCAGCCTGTCCCCACAGCCATGGAGCCTCCAAGCCAGCCAGCCCCACCAGAGGCCACAGCACCTTCGGAGAATATCCAGATCAccccagTGTCAATCCAACCTGAAGCTCTACAGCAAGAGGAGCCATCTGCTACTGAAAATACTGCAGAAGAAGTTGCCACTGTGACTGAACAAGGATGGGCAAAGAAAAGAAAGACATCCGTTAACTTAGTCTCAAGGGCTGCCGTGGAGAAGTCGAAGGGTCCTAGCAGACGGAGCTCGCGGGCCGacaaggaggtggaggaggagactgTGGCAGACAGCATGCAGAGGAAGAGACCGGCCAGGCCTGGAGCCGGTGCTGCTGCTAAAGAAACGGGTGCCAGCCCTACCCAGGCTAAGAGAAGGAAGTCTAAATGACCGCAGTAGTGAAACCCTGTGAACTGAAttgtaaatgtatttttctttgtcAATCATTCGATGAGCTTCTTTTCTCCAGGATTACAcattttttatggtgaaaataacCATGTACAGATAATTGTTTGAAAAATAATTGTTGATGTTTTGTCCCTGCTATCATGTGAGgttgtagcgtgtgtgtgtgtgtgtgtgtgtttaattaaTTATGTGAAGACTGATAATAAAACTTGACTCAATTGTATAATTATGTTGTAAAACTTCATTAAATGTTCTACTACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2401219 lncRNA downstream 26022 6389544 ~ 6390674 (-) True G2099239
TU2401216 lncRNA downstream 49262 6366083 ~ 6367434 (-) True LOC110508398
TU2401223 lncRNA downstream 51483 6364396 ~ 6365213 (-) True LOC118944869
TU2401266 lncRNA downstream 71870 6344483 ~ 6344826 (-) True G2099286
TU2401243 lncRNA downstream 108021 6307866 ~ 6308675 (-) True G2099263
TU2401363 lncRNA upstream 92816 6548898 ~ 6549567 (-) True G2099377
TU2401370 lncRNA upstream 103822 6559904 ~ 6562267 (-) True G2099384
TU2401361 lncRNA upstream 145937 6602019 ~ 6602819 (-) True G2099375
TU2401400 lncRNA upstream 177876 6633958 ~ 6634479 (-) True G2099413
TU2401415 lncRNA upstream 189915 6645997 ~ 6646308 (-) True G2099428
XM_021588906.2 mRNA downstream 44441 6366101 ~ 6372255 (-) False LOC110508398
XM_021588907.2 mRNA downstream 44956 6366101 ~ 6371740 (-) False LOC110508398
XR_005040270.1 mRNA downstream 51014 6364380 ~ 6365682 (-) False LOC118944869
XM_021588900.2 mRNA downstream 210398 6200172 ~ 6206298 (-) True LOC110508395
XR_002471243.2 mRNA downstream 334975 6080962 ~ 6081721 (-) True LOC110508207
XR_005040299.1 mRNA upstream 116854 6572936 ~ 6573052 (-) True LOC118944894
XR_005040298.1 mRNA upstream 117256 6573338 ~ 6573528 (-) True LOC118944893
XM_036966719.1 mRNA upstream 147093 6603175 ~ 6639138 (-) True LOC110508402
XR_005040300.1 mRNA upstream 224424 6680506 ~ 6680622 (-) True LOC118944895
LOC118944892 mRNA upstream 248779 6704861 ~ 6704979 (-) True LOC118944892
TU2400957 other downstream 178083 6238169 ~ 6238613 (-) True G2098997
TU2400956 other downstream 178602 6237433 ~ 6238094 (-) True G2098996
TU2400730 other downstream 417202 5995825 ~ 5999494 (-) False G2098793
TU2402165 other upstream 747524 7203606 ~ 7206488 (-) True G2100109
TU2402839 other upstream 1137212 7593294 ~ 7593815 (-) True G2100707
TU2402916 other upstream 1312334 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other upstream 1312334 7768416 ~ 7771183 (-) True LOC110508434
TU2403222 other upstream 1537329 7993411 ~ 7998865 (-) True LOC110508443

Expression Profile