RNA id: XM_036966294.1


Basic Information

Item Value
RNA id XM_036966294.1
length 9283
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110508473
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9739138 ~ 9883971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGACCAGACACGTAGCCTACCAAAAATCGACAGTGACATCCGAGTGTGAGCGAGGCAAATATTTTACCTGCCGCATGCGCAATGTCTACGAGGATCAGCGCGTCCCTAATGAAGGTGATCGGCTCAGTATCGCTTCATAATACCAGCTTAATTGTATCCATTTATTATTTGTACCAAATCGGTTATAACAAGTGTTTGGCTTGATATTGAGGGGTGTCGGTGTGAGCGCGCGGTGACAAGACTGGGCTGTGTTCGGGACTGTCTCTCCGATATGGGTGTTCAACCCTCCGTGGGAAACTGAACGAGACATTCtgcaagagagggggggggggggaaacagcagagaggagcTGTGAACAGATAGAGAAAGATATTCAACACGGCGcctgtcctccatctcagtgtgAAGGGCACGTAATggaagagtgagagggaggataCAAGGAAAGAGAAATAGGGAGAATGAAGACAGCCGGAAAACAAGTGTTTCCTTGCACCAAGCATCACTCAAACTAGGACATCTCACCACAGGACAAGATGATCACCAGGAATCTGCTCCTATTGGTCTCACTGTGTCTGTGGGAGGAGCTTATGGGAGAAGGTTCAGCCACTAAGATTTTCAGGGgaagaggggttggcgggactCACATGCTGAAGCTAGGGGAGAACAGAATAGCGGACCAATGGGATTCAAGCGTGAATTCAAACGTGATGCCCATGGTGACTCTTAGAAACTCAATTGGTCATGACCTGGGTGGTGATAGTGGCTCTATCTCTCACCCCAAAATACCCCAGAATCATGCAGCCATGCCATCTAATAAGGAGAGGCAGGCTTTTAAACCGAATCCAGTTCTGGACATGGAAGAAAACCCTATCAAAAAAGGAGAATCAACTCTGTCACCCAATAACAGGGAATCGGTCCAGGAGAAAGAACTTAAAAAGATCAAGAACAGCACCAATAATGCTGGGACTCCCACCAAAACAGGGAGGATGGAGAAAGTATTCCTAGTTCACCATAGACCAGACCTACACTCCAATAGAACCAGATTCAAATCCATTTCCCGATCCAGAGTGAGACCAGATCTGAGCATTCACACCACAGGGCTGCAAGGCAAAGGACTCACTATGGATTCAACCAGAAAATTAAATGTGACCGGCAGCTACAGTGTCCTAAAACTGCTGTCAAAAGAGAACCTGGTGATGATTGTGAACTCACAGATGCAGAGTGTTCCGAGTCTGAATGATTTTCAGAGCAAGAGCAGTCGAAGCAGAAAGAGAGATTTGATTGATGTGGATCACAGCCCGATGGAGGCCCTAAAATTACAGAAGCAAGATTTGGCTGTTACTCAAAACCACTTCGCATTGGATAATCCAACTTCACTGCCGCATATAAACCCTGTCACAAATCCTGATCCAAGTCTAGAAAAGGCTGTTCACACTTTAAGTGAAGTCACTCTAGATTCTGGTGTGGGAAAATACAACTCTGAGATGAGGGCTGCAGATAGTACAGTCACTTGGAAGAGCAAACACACCTCTCACCCTTTGTCAACACCTATGAATGAGGTCAGTCTCGACACTGACAGGGAGGTGACCATCAGTAAGACCAGTAAGACTGACCCTCCGGCCATGACCAAGCATCTCCCCTCAAGCATCTCTTCTCAGACAAATGCTGGCCCTCCCTCAGTGTTCACCTCGCAGCCCCAGGGAGAAGGGACTGGGAGTGTGGCAGGGGATTCCCATAAGGAGAGTTTTCTTCACACAGCCGCACCAGGACTCAAAATCCTCAGCCCGATTGCCACTCAAGACCCTGAAGGTGGCGCCACAGAGCCAATCGATAGCAGCCATGTCCTCAAActacacccagacacacactggGGCTTCAACCAGGACAAGGCAGCCGGTGGGGGGATGACAGTTGAGTCCCATCCCGGGAATGGGCGGGGCCTGGTGTTCCAAGAggcggatgaggaggagggccgtGGTCAAATGGATGGGGAGGGGGCTCGGTCACGCAGCAGGAGGAGTTGGATCTGGAACCAGTTCTTTGTGATTGAAGAGTACAGCGGGCCTGAACCGGTGCTCATCGGACGGctgcacACTGACATGGACCGAGGTGATGGACGCACCAAGTACGTGCTGAGGGGCGAGGGGGCGGGGGCGGTGTTTGTGATTGACGAGAAGACGGGCAACATCCATGTCACCAAGCCCCTGGACCGCGAGGAAAAGGACGAGTACCGCCTCATCGCCACAGCAACCGACCGGCAGACCGACCGGGCCCTGGAGCCCTCGTCCACATTCATCATCAGAGTGCAGGACATCAACGACAACCCACCTCTGTTTGAGGAAGGGCCCTACAGCGCCACGGTGCCTGAGATGGCCAACATAGgtACTTCTATAATCCAGGTGACAGCGACAGATGCTGACGACCCAACCTATGGGAACAGTGCCAGACTGGTGTACACACTGGTGCAGGGACAGCAGTTCTTCTCTGTGGACCCACAGACAGGTATACTGCGCACAGCGGTGCCTGATATGGACAGGGAAACCCAGGACCGGTACATGGTTGTTCTGCAGGCCAAGGACATGGGGGGCCATCTGGGAGGTCTCTCAGGGACCACCACTGTCACCGTGAGGCTGAGTGATGTCAACGACAACCCCCCTCGCTTCACACAGAgtatGTGGTCGTTCTCTGTGTCCGAGCTGGCTGTTCCGGGGGCGGAGGTGGGCCGTATCTCGGCAACAGATGCTGACCTGGGCGACAATGCCAAGCTGGAATATACCATCctggagggagagacggggaacacCTTCAACATCAGCGGAGCGAACCAAGAGGCTGTGATCACACTGAACAAGGCTGTGGACTATGAGAGTCGTAGCTCCTACTCTTTCTCCGTGGAGGTGTTGAACCCCATGGTGGACCCTCGTTTCCTCCGCCGTGGGCCCTTTAAGGACCGCGCCTCCATCCGGGTGGCCGTGCTGGACGCAGACGAGCCGCCCCGCTTCTCCCGGGCTCGCTACCGTATGGATGTGTCGGAGAACTGCCCTCCCGCCTGCACCGTGGGACGGGTTAGTGCTGTGGACCCTGATACTGGACTCACCAATAACATCAGgtTCTCTATTGATCCCCAGTCAGATCCAGAGGCTCTGTTCCGTATCACCCCGGACAGCGGCCTCATCACCACGGCCATGGAGCTGGACCGTGAGCGCGAACAATGGCACAACATCACCGTCATCGCCACACAGAGAGACAACCCCAGCCAAGTGTCCAGAGTGGTGGTGACCATAGAAACGCTGGACCTGAATGACAATGCTCCCGAGCTGGACAGAAAATACACAACAGCCATGTGTGACTCATCAGCCACCGGACagGTGGTGCAGGTGTTGCGTGCGATTgatagagatgagggagggaaTGACAGCGCTGTCTATTTCAGCATCCCTCCAGAGTCCAGCGTCGCCCTCAACTTCAGCATCAGGGACAGTGGAGGCCCCACCGCCACCCTGTTGCTCTTGTCGCCCCTGCAGCCCCTCTCCCgctcgtcctcctcctccctcacgcTGCACGTCCCCCTGGTACTAAGGGACGGGACATCTGGCCTGACCTCCACCGGGACGGTCACCGTATCCGTTTGCCCCTGCCTGAGAGGAGGGGCCCGGGctggggagaaggagaggcaggagaggcagacggagggagactgggagtgggagagagagacggtgtgtgtccCCCAGcagtccacctctccttcccctgGGCTTAGCACCGCCGCCCTGCTGGCCATCCTGGCCTGTGTTGCCACTCTGCTCGCGGTCAGTGCCTTGTCCCTGTCCCTCCGCCGTCAGAAGCGGGACTCTCTGTCCCCCCTGGAGGAGGACGATGTGCGGGAGAACATCATCACCTACGACGACGAGGGTGGGGGTGAGGCCGACACGGCCGCCTTCGACATTGCAGCGCTCCAGAGCGCCCCCCACAGCTCACGCAGGGTATACCGCACCCTGGACAGCAGGaacatACGCTACTCCCAGCACGTCCAGGACAAAGCCCAGTCTTACAGCTGGGCCCAGAACCCAACCCTGGACCCGGCCTACTCCGGCCCTGGAGGGCCCATGTACGGCCGCCTCTGCTACAGCAGCCATACCTTACCTGTTCTCCGACGTACTCCAGGGAGCCAGTTTGAGCCGGGTCTGGCTGAGCTGGCCTACCGCTTCCCCGGGGGCCAGCCGGACCACTCGTTGGTCATCCAGAATCAGGGGGCCATGGTGGGGGCCCTGGAGCCAGGGGCCGTGTACATAGGCCCAGCTGAAATgagcagcagagagagcagagacggAACGGGCCCGCAGAGCGGGGTTAGCACCTCAGATGGAGGGACACCGCGGACCAATGACAGCCAGGAGAGAGGCGGAGGGGGAGCTATGAGCAACTGTACAGAGAACAGCAGCGAGCAGCAGAGCCAAAGTCAGGACTCAGTGGACATGGTCCAGTCTGAGACCCTCCCCCGGGAGAGGGAGCACAGCCTGGTCCTGACCCGCTCTGGCTCCGTggttggtcagggaggtgccTGGGTGTGTGACTCGGCCACCCTGCCCATGGCGGGCCGCAGAGCCTCCCGCGCAGGCCTCTCCCCCAAACGCTCCGGCTTAGCTGAAGGAGGTTCCtctggtggtggaggtggaggcccTGGGGCGAACGGCCCAGACAGCAAGTCTCAGCAGTCAGCCGCCCGCAACTACACCAGTGTCCTGCAGGGGGAGGCAGCGGGACAGAGGCAGGACTACCCTGGGAGCATGGGGAGGGGAGGGCTGGAGATTGGCAGCAACTTTGTGGTGGCCAGGCCGGACAGGGAGGGCGGAGGGATATCTCTGACTGGCACTTCTTGCGGGGGGATGTACCCAGAAGGGTTCATGGCTGACTGGCGGGACAGGGTGGGTATTGGGGCATACATTTTAGGAAGAAGGGATATGACCCCCCAGATGCTGCCCTTCCCAGGGCAGCCCAGGGGTGCATATGGGGGCATCATGGGGTACGGGGCAGGGTGGGTCCCAGggatagaggcagggagagggggtcCAGTACCAGGTGGTCACTCCTTGGCCCTCAGGGTGGGTGAGTTCCTCCGCCTTCGTCTGGCTCAGGTCACCTTTGACCCCTCGCAGCCTCCCTATGATTCAGTGCAGGTGTACGGGCTGGAGGGCACAGGGTCACGTGCAGGCTCACTCAGTTCgctggagagtgagggagagaaggatgcagagaaggaggagtggggaggaggactggaggagtggGGTCCACAATTTCAGGAGCTAGCCAAGCTGTTCCGAGATAGGGAGAAAGAAAAacaagaggagacagagaaggatggggagggaggggtagagaacaACAAAAAAGAGGCTGAAAAAGAGGAGGGGCAGAAAGAGGAGCAGTCTGGAGatgaggggaaagacagagagggagaagagaaaaaatgagagagaatgaggggagggTGGAAGAATGATTAAAAGGCAAGCAGAGTTAGAATAATGGGAAGAGAAGTTaacggagagagagatgaagagggagaaTAATAAAAAGAGACAGATAAAAATGAGCCCAGGGAAGCAAGGGCAGGGGAGGGAGTGATTGATGTAATTTAAAGCAATAAGTGGTGAAAGGCTGATACGTGTGAGCACAGATACTGAGACAATGTGCATGATGTTTCTCCACTAAGCAGCAACAATTTGTTAAGTGGTCTGGACAAAGAGAAACAACTTAAACATCCGAGACAGGATTTTCATTCAGCTCTACATCTATagaaatagaaagaggagagagggagtgagcgaATGTGTTTctttgtttgcgtgtgtgtgggatgagggtgtgtatgtgagagagagaaattggaaacaaattattattattttatttatttttttgggggggggggggtgcaagcAAGACAATACATTCAACAAGGAAGTATGGAAAATTAGGGTACCACACGGAGGAGAAGGGGATATAAGATGACcaagacagagggatagagaagaaagacaaagaaggagagagagagagagagaggggggaagagagatgatTGTGCAGAAACTGTTGCATTCACACCGTCCGCAGAGGCAGAAAAGTGAATAATTCAACTCACGACTTCATTCCAAATAAAAAACGATGAATCATTTAAATCGCTGAAAAAGTCGTATCACTGGAAAATACACATGTGAGAAGAAAAAAAGGGATATGATATTCCCAGGCTTAGCTGAGTGTCGTTGTGTTTACAAACACAGgctagacatttttttttaaaacacgtttatttattttttgtgaagcttgcattcaattgccacaCTCTATTGCACAGAAAAGCtaccattccccctgtcacaaggggatttatggctgaatTAAGATTAAATTGTCAACCCTgtcacggtcaaccctgttaccgtCAAACGTGTTACTTTATTTGGaacttaataggcacttactatatatgtttttttttccattaacctcttgagatgggaaaacattttttttttcaagatgAAAAAAATTCTGTAATTAGGTGGAATCAAAGTTTATTATGACCAAGTTatacttctcaaaaggcaccgaattgATGGAACGACccacaacacccacacacactaaaGACTCATTTGTGTTATCAGGCATTGATTGTATAATAAATCACGAAAGCAAAAGTATTAACAAGATGCATTGAATCTATGTATGAATCTAATAAATCTCTTCTAAATCGATTATTTTACTGTatgtagggaggagaggagagacatgactATTTTTTATGCAAAACCTCCATCTACTCAATCAACATGTCTTGAGGACCAAGTCTGCATGATTTGAGCACAATCTCAACCAATCTCAACCGCCTATTCACACTCTGAAAACTCTTAACCGTCCAATCCGTAACTTCCATTTATCAGTGAAGAGTGTCAGAATGAAAACCAGCAGGCCCAGCGAACAGAAACAACTGGGCCCCGTAATGGTCAAAGGTTAGAGGTCAATTTAAGAATGAGCTGGGATTTCAGCTGGAATGCACTTTTATACTGTGTGGCGTTCAATACTAGACTATGAATAATGTCAGATCAAGTTTTTTTTTAAGAAGATGTCTATGGACGataactactgttctactgtatgtgaATGCATTTGTAAATATCAGTGAATATCCTTGTTAAAAGAGAAGATAATTgtcacaacaaaaaaaatctaagtgGAAAAACTGTCACGTTTGAACAGAGCACTGTTGGGACAACTTAGACCTGGCCTAGATTAATATTTCAACCAGACTGGACTTGATTTACCTGACCCTGAACTAAACTGGCACGATGTACTTTACATTAGGACAGACCAGGATATCGTGTGCCTGACACAACATTCTTGTGGAAAAGCAAAGTATTCAAATAGGTCTTTAACCTGGCAAAAAGTGTTATGCGGAACATGAGCACTCGATTACTTGTGAGGTACTCTGCTTCACTAGCCATGTATCTGACAAGAACTAGAAGCCCGGCGTGCAAGGTTATGTGAGGTAGCTTTCTTAAAGCCAGCATTTCGATTAATACCGTTTCCGTTGAAAACCATTTAACTGGACCATGAAAACTGCCCGATGCTGTATTCTATTCTCCAATGCAATTGTCACAACCCGTTCGCTGAATTGACTGGAGCTGTAATGGAACCGACCCCAAAGAATACATATAGTGTCCCCGAGGCAGCAAAAAGAGACTCCTGTCAGCTCAGACTTTATGTGCCGTGCCCAAAAGTTGTGCACTGTTAACTTAACATTGGCTCAGATTGTGACAAACCCCTAGTGAAAAGAGAAAGTCGGCACAATCACCACAAGAGTCCACAATCACACTGTGTCCCTGTGTAAGGTCCTGTTGAAATACTTTTAAAAACGCGCCCTTCATCTCTCACTGATCTGACAAGTCAAAGCGATGGAAGGGAACCCTTCCTTTTTCACCTCTCAAATTGGGTTTAGATCCGTGATTATTACTTCGAGGATGGGCGGAAGCAGGGATGCGTTTTGCATGTATTCAAATCGGGCCAAAGACTTGACTGGACCCTGCCAGGACTACTGTCGTAGTGCACAAtctctgggggaggagaggggagcggGACCCTGGAGAATGGTCTGACCAGGCTTGGTCAAACTCCAGCCCTGATATGGCTAGCCTCCTTAGTATTGTATAGGCTCGGCACCatagtggaggctatatagagcagggttattcaactcttaccctacgaggtccggaacctgctggttttctgttctatctGATAATTAATTGCCCAGGTCTACattagtccctgattagaggggaacaatgaaaaacacagtggaactggcttagaggtccagagttgagtttgaggacTATAGAGGTTAGCCATACCAGGGCTAGTCAAGCCCTATTCACAGGGAATAACCACATACACCTGTAAAACACCCTCACATACACTGTGGAATATGTTATGTAGTTCACACCTATAAATATAGATAATGTAATATATGTGTGTGTCGTAATTATAAACGGATTGGTGCCTCATCTACTGTGACATAATGACTTCTGTCCCCGGAAACATGGTTAGCCAGCGCCGATTGGCTCTTGGTGTTTTGCTTGTGCTGATTGGTCTAAATCAGAGTGATGCTCCAGCTGATTGATCTGTAGTTGGCGAGGCCTTGGCTTGCAGTGCCGCCGTCACTTAACTACTTGATTGAACTGATTATGTCACCTCCGGAGGAAAGGAATCGAAACACCAAATTGGTCCAATCAAAGgcatgattagttgaatcagtcGCCTCCTGTCGCAGGGGCACTCCAGGACCGGGGGTTTCCTATTCCtggtcaacccccccccccccccccccccccccccctcactttaGTCAGAGAGGAAAGTGAGATTGTCAGGAGATTTATCAAACCATTTACCCACGCAATTAAATGCAAATGAAAATACACTGCATTTAATGACAGGTCCTGACATGCTTTACATGTAGTGTTTCAGGGGTGTGTGGTtgtattctgtgtgtgttctggagGGTAGAAGGTCATGAACTTTGAACGCCACCAGACGACCCCAGGTTCAGTCTCCCTTTTGGGACTTCATCACTCCTGCACGATGTTGATCAAATTCCAAGATGGCGTGCTGAATaaagtaaatgtatttattatgttgtatttttccttttcttttttgtAAATTTGAATAAAAAATCATATGTTTTAAAGAGATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2405392 lncRNA downstream 11254 9722571 ~ 9727884 (-) True G2102992
TU2405296 lncRNA downstream 156221 9579184 ~ 9582917 (-) False LOC110508470
TU2405293 lncRNA downstream 156221 9579255 ~ 9582917 (-) True LOC110508470
TU2405301 lncRNA downstream 191817 9542124 ~ 9547321 (-) True G2102903
TU2405251 lncRNA downstream 265131 9472629 ~ 9474007 (-) True G2102863
TU2405491 lncRNA upstream 39115 9922014 ~ 9922364 (-) True G2103090
TU2405496 lncRNA upstream 43568 9926467 ~ 9926684 (-) True G2103095
TU2405499 lncRNA upstream 45254 9928153 ~ 9928465 (-) True G2103098
TU2405512 lncRNA upstream 62049 9944948 ~ 9945292 (-) True G2103111
TU2405516 lncRNA upstream 64168 9947067 ~ 9947303 (-) True G2103115
XM_036966211.1 mRNA downstream 63919 9629144 ~ 9675219 (-) False LOC110508471
XM_036966210.1 mRNA downstream 63920 9629144 ~ 9675218 (-) False LOC110508471
XM_036966212.1 mRNA downstream 63920 9629144 ~ 9675218 (-) False LOC110508471
XM_036966213.1 mRNA downstream 63920 9629144 ~ 9675218 (-) False LOC110508471
XM_036966214.1 mRNA downstream 63920 9629144 ~ 9675218 (-) False LOC110508471
LOC110508157 mRNA upstream 14874 9897773 ~ 9937313 (-) True LOC110508157
LOC110508158 mRNA upstream 56074 9938973 ~ 9940505 (-) True LOC110508158
XM_021589014.2 mRNA upstream 121327 10004226 ~ 10007929 (-) False LOC110508476
XM_021589018.2 mRNA upstream 147894 10030793 ~ 10041030 (-) False LOC110508478
XM_021589019.2 mRNA upstream 147894 10030793 ~ 10041031 (-) True LOC110508478
TU2405308 other downstream 170087 9567966 ~ 9569051 (-) True G2102910
TU2405103 other downstream 483972 9231694 ~ 9255166 (-) False G2102731
TU2405120 other downstream 558988 9178334 ~ 9180150 (-) True LOC110508459
TU2404356 other downstream 761039 8976852 ~ 8978099 (-) True LOC110508274
TU2403860 other downstream 1256725 8481732 ~ 8482413 (-) True LOC118936616
TU2405551 other upstream 121327 10004226 ~ 10007903 (-) True LOC110508476
TU2405613 other upstream 230529 10113428 ~ 10115397 (-) True G2103203
TU2405667 other upstream 323164 10206063 ~ 10206676 (-) True G2103257
TU2406439 other upstream 825113 10708012 ~ 10708499 (-) True G2103920
TU2406504 other upstream 1003299 10886198 ~ 10894080 (-) True LOC110508522

Expression Profile