RNA id: LOC110508806


Basic Information

Item Value
RNA id LOC110508806
length 457
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110508806
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26845034 ~ 26845490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTTTCCAGCTGTAGATAGTTTACTTAACTTCATAACGCAACATATTTGGTCGCCAGGCATAATGTCCAATTACAGAGGTTCTGAATCTAAGTGGGAACAATTTTGAAGGTATCTCGAAAAAGCGGGTGTTTTTGACACTCTCACCAATGTGTTGGTGGCCCTATACGAAGAGACAGAGAAACCTAATAATTCTTTGAACTTTCCAAAGCATCACCTTGGTGTTGCTGGTGTGGAGACAGCAGATGCCGAGGCCCTTCGTTTGGGGCTGTCTGAGCTACAGCAGAAGTGTGATCTGCTCATGGAGGAAACCAAATAACTCAGAAAGAGGCTTCTGCAGTATGAACCAACACCTGAGGATGGAGCAGCGGAGTAATGTAGTTGGTTGAATTGTTATATTTTTTTCACTGTTTGGAAGGGGCGCTTAATGTAAAGCCATAATTtctttatagtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427391 lncRNA upstream 32219 26774977 ~ 26812815 (+) True G2123026
TU2427250 lncRNA upstream 95873 26721205 ~ 26749161 (+) True G2122910
TU2427261 lncRNA upstream 108459 26735992 ~ 26736575 (+) True G2122921
TU2427242 lncRNA upstream 131643 26712825 ~ 26713391 (+) True G2122903
TU2427241 lncRNA upstream 132325 26712433 ~ 26712709 (+) True G2122902
TU2427426 lncRNA downstream 33854 26879344 ~ 26882608 (+) True LOC110508195
TU2427493 lncRNA downstream 72628 26918118 ~ 26918536 (+) True G2123096
TU2427496 lncRNA downstream 77371 26922861 ~ 26923286 (+) True G2123099
TU2427509 lncRNA downstream 103598 26949088 ~ 26949338 (+) True G2123110
TU2427508 lncRNA downstream 104177 26949667 ~ 26950517 (+) True G2123109
XM_021589627.2 mRNA upstream 135466 26707377 ~ 26709568 (+) True LOC110508800
XM_021589625.2 mRNA upstream 158226 26679791 ~ 26686808 (+) False LOC110508797
XM_021589624.2 mRNA upstream 169353 26656615 ~ 26675681 (+) True LOC110508796
XM_036966052.1 mRNA upstream 188924 26628352 ~ 26656110 (+) False LOC110508795
XM_036965952.1 mRNA downstream 21468 26866958 ~ 26885231 (+) False LOC110508195
XM_036966157.1 mRNA downstream 223555 27069045 ~ 27136729 (+) False xrn1
XM_036966153.1 mRNA downstream 223557 27069047 ~ 27136729 (+) False xrn1
XM_036966155.1 mRNA downstream 223557 27069047 ~ 27136729 (+) False xrn1
XM_036966156.1 mRNA downstream 223557 27069047 ~ 27136729 (+) False xrn1
TU2427225 other upstream 156528 26679813 ~ 26688506 (+) True LOC110508797
TU2426451 other upstream 470474 26357538 ~ 26374560 (+) True G2122177
TU2426060 other upstream 1123360 25720440 ~ 25721674 (+) True G2121837
TU2423103 other upstream 2734324 24101157 ~ 24110710 (+) False LOC110508774
TU2422439 other upstream 3680711 23163866 ~ 23164323 (+) True G2118574
TU2427500 other downstream 96710 26942200 ~ 26945187 (+) True G2123101
TU2427592 other downstream 255822 27101312 ~ 27104270 (+) True G2123174
TU2427588 other downstream 260544 27106034 ~ 27109282 (+) True G2123170
TU2428289 other downstream 875110 27720600 ~ 27723988 (+) True LOC110508827
TU2429614 other downstream 1676737 28522227 ~ 28538412 (+) False LOC110508851

Expression Profile