RNA id: XM_036966135.1


Basic Information

Item Value
RNA id XM_036966135.1
length 10070
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110508904
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29999454 ~ 30032487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTTTACACGCGGAGCAGCAGGCAGAATAGTGCtgctgagggggagaggagagtaagCGGCAGGAGTCGCTTCTCTGCCATGCTCCCCACACCCTGCATCCTAAAGCCTGGCTTCCACACTTCTTCCACCAAGGCAATCCTCTTACTTGTCCATTCCCGCTAGAGTGTGTGGATAAAACCTTCCCAGTGCACTGTGTGTGTAGACTATCTGCTTGCAGTGGAATTAAGGAGCTCAGACAAGCAGGACAGGAGCACAGTACGGACTGTAAGCCCAGTACAGCAGCTACAGGAAGGACCCTGCTTTTTTTCCCGCCCCATGCATCATTTAGTGCTGAAATGCCCGAAGTCAATGACTTGTTCTCTGTCGATGATGTACCTTCAGTTCAAGAGGATGCTGAACAGAGAGCTCACTCAGCTATCAGAGGCCAGCAGATCAGGGAACCAGGTGTCAGAGTTCATCTCCAGCACCTTCCTAGAAAAGCAACATGACATGGAGATCATGTCTCCACACAtcaaggagaagaaggagaaaacGGACAAGAAGAAGCGTCCCATGTCCCAGATCGTGGGGGTAAAGAAGCCCAGAATCATCCCCAGTGTGGCCCCCTCCAACATCCCCCGCTTCGGGGTTGCAGCCACTCAGGAGGGCTTTCTCGCCAAGCATTTGGAAGATATAAACCGATGGGGTGTGGATATTTTCAAAATATCTGAATATTCTGGGAATCGTCCGCTGACGGTGGCGATTTATTCAATTTTCCAGGAGCGAGAGCTGCTGAAGTCCTTCAAGATCCCTGCAGACACCTTCATCACCTTCATGATGACCCTGGAGGACCACTACCACCATGATGTGGCCTATCACAACAACATCCACGCTGCAGACGTGGTCCAGTCCACCCAcgtcctcctctctacccctgccCTGGAGGCGGTGTTCACTGACTTGGAGATCCTAGCTGCTCTGTTTGCCAGTGCTATACATGATGTGGACCACCCGGGGGTGTCTAACCAGTTCCTCATCAACACCAACTCCGAGCTGGCCCTGATGTACAACGACGTGTCGGTCCTGGAAAACCACCACCTGGCCGTGGGCTTTAAGCTGCTGCAGGAGGACAACTGTGACATCTTCCAGAACCTCAGCAAGAAACAGAGGCAGTCCCTACGCAAGATGGTCATAGACATGGTGTTAGCCACAGACATGTCCAAACACATGAACCTGCTGGCTGACCTGAAGACTATGGTGGAGACCAAGAAGGTGACCAGTCTAGGAGTACTTCTACTAGACAACTATGGAGATCGTATCCAGGTCCTCCAGAACATGGTTCACTGTGCTGACCTCAGTAACCCCACCAAGCCCCTGGAGGTTTACCGCCAGTGGACTGACCGCATCATGGTGGAGTTCTTCAcccagggggacagggagagggacaaggGCATGGAGATCAGCCCCATGTGTGACAAACACAACGCCTCCATCGAGAAGAACCAGGTGGGCTTCATAGACTACATCGTCCACCCTCTGTGGGAGACGTGGGCAGACCTGGTCCACCCTGATGCCCAGGACATCCTAGACACGCTGGAGGACAATCGCGAGTGGTACCAGAGCATGATCCCACACAGCCCTTCGCCCACACCCGAGGCCCAGGACAAGATGGGCCTGCCTGGGGGAGCCATGggagctggagggggtggaggtggatCCTCCACAGGAGATAAGTTCCAGTTTGAGCTGAccctagaggaggaggagtgcgAGTCTGACACAGAGAGCCCTCCTGCAGAGGAGGAGGGGTACAGTAGCACTGGGATGAAGCCTTCTAGGACTGACCCGGACAGCAGACTCCATTCCATGTCTGCCACTTCTCACCCACACACGCAAGTACTCTccaaaatggctacctctgtccTCAATCTTGGTGGCAGGACTTTGTCCACAGACTCTGACCCAGAAAGGGAGGCCACCGAAGACAGAGAACATGACCAAGAAGGTAACGCCGGTGTGAGGCGCTTCAGGCTAGGTACATAACAGTAcaatgttcttttttttttctcttattttttaaaaaacatttctgAGCCTCCCCTCTGACCCCTTCAACCCCCATCTCTGGCTTCCTTGGATTGAATGGCAGGACAAAGCTGGGGTAAAGAACGTAGAGGGGGTGCGTTCAGGAAGTCTGCACTTACACAGCAGTCACCTCGTACTGGAGAAAGGAGAGCCCCACTGTTCCTTCTTTGGTTGCAGAGAACAGGAAACCGTGTTTTTGAGCTGGTCTTTTGTGTTTTACCCGATACGTCTCTGAGTTGGACGTGTCCCCGTATTCAGCTTATGTTTCTCAGAGACACTGAGAAAACCAACCTTCCTGTTTTGCAAGTCAAGCCAAGGTCTACGACAAAAGAGCAAAGATTTTGTGGAACACGTCTTCCTTTTGACTACTTATGACCGCTTGAAACAATTGACGAAGCGACAAACTTAGTAACAACAAACACCACAAAGGCTTTTGAGACATTATGCCAAACAGATTAATAAACACGGACTTGGCCAATGGCAACATTTGCCTGCCTTTTCAACTGTTGGTCATTTTGTCTTTAATTTAAGTCCTTTTAAACTAGTGCAGAAAGTGGTTTAAACCGGTAAACTGCAGACTTACCAAATATGTACTACAAAGGACAAAGTACAGAGCAGAACGTCAGAATTGAGGAAGATATTGTTTCAATGTAGCACAACACTTTTTGGGTACCTTGTTGTAACAGCTACTCGGTGCATCACTAGGGGTCTCTCATCAGCCACACTCTTAACAACTGGTTTAGGGTCAGTTCTTCCTCCCACAGTCCTAACCACAGTCCTGTTATGTGTAAACCAACAAAACCAACCCTGAGCCAGCCGTTATAGGGACATATTAGTAACCCAAAGCTATGCGGTGTGCACTTGGCACCTCCCAGTGTTGAATATCGGAATTAAAGTCTGAACGTGTACTGCAATTCAAGGCATTCAAAATGCCCATACCTACAGTAAATTGACTATAGGTATGTTAAGTGGATTGGTTTTAGCGGTATTGCTGTTGTAGGCAGGGGTATCCAAAACAAGCACTTCAGTTAAGATTCACCACTTGTCTGTATGATTTTATTGGATGTAGTTTTTTTCTATTTGAAGTCCCTCATAGTGTATACATACTGCTTTATACTGTAATCGTGTGTATCCTTAACCTTTTTATGGCATCAGTTTGCCTCCACTTTTAGCACTTTACAATTTTACTCACAGCCAATCCTCATCCTGCTTGGAAGGGCTTGAGCCAATCCATAAACACATTGGAGGCAGGTGACTGAGAATTTTTGTTTGCCACTGGCAACATGGTAGCCAGCACGTACATACCCTAGCACATTAGGATAACTAGTTGCATTGAGGGAACCTGGACAGAGTTAAGTTAACTGTTTGACAGTACAGTAGGGCTGTGggacattttttacatttacattttagtcatttaacagatgctcttatccagagcaaattACGACTTGAGCGCATACATTTTCATCCTGGTcccagtgggaattgaacccacaaccctggcatttgcaagtgccatgctctaccaaatgAGTCAAACTGTACAATGTCCTTTCAAGTCTATTGTTGTTGTTACAGTAAAGGTCTCAAGTTTCCTACTTACTTCAGGTACCATCATCTGGTCACACTATCAACCAGTTGAACTAGTAAATAAAAAAGATACATTGGTAGAGTTTACATATGTTATCACAGTTTGTGAAGCGCATGGTGTAATATTTGCCAAACTATTTCAGAAATGTATGAAAGATGTGCCGCTCAAGGCAATtgtaactgtaaaaaaaaaagagaaaaaaagaccGTTGGCCATAGGCCAGTTTTCTGTGCTGAAATTTTCACACCCTTTTCCTTTTGTCATTGGTCAATATTCTGCTCTTCACAGGGACATGACCAATGACAGTACAAGTGCCAAGCAAGCATGACACAACTCGTACTGTAATTTCCATTTTGCCCCAGGCTAATTTCCATCAATGACTAATGTTGATCATGTCGCCCTCCCTGTGTACCCTTTCTGCCCCATAGGTTTTCTGTTTTAGAACAATAATTCACTGATAACTGCACCTTTCTTAATGTTTGAATGGTTGGACATTTAGATGAATTGAATTTGTAAAGAAACCAAAGCACTTTGTATGGTAATTTTTACAAGTCTGTGCTTAAAGTACAGTCGAGTGTGATGTAACTCTGTTGACTAATCCACATTAGTATTCCGTATTCTGGTATTATGTGGCTTGATTATTACAATTGATGCATAGCACAGGCTGGACCACTGAAGCTAAATTGGGGGACTTGTGCTATGGAATTAAAACTTTTTGGTATCTATAATATGTTTTGATAAAGATGCATGAAAGATGCTAGATTCATAAGGAAATTATTAAAGTATCTAAAATAAGCTCATCTGTGAACAGAAACCTTTGAACCTACACATGGAGTAAATTGATGTTGTGTTTTTACGAAAGATCCAGAAATGTGACTTTCTGGAGCCTTATATTTGTGTACGTTTTCTTTCCTCATAGATTGTATACTCGATATGGTGGGGAGACACCAGTGCCATGCACACAGTAGTTAAGGAGCACAAACAGTTCAGAACTCAAGCAAGCCTTTCTGTCTTTCTCAGCTGTCATGAAAAATGTCTTCACCAGCCATTGTTATGACAGTATTTTCACAAGGATTCAGTTATGCTCTCTGTCTACCATTGATTGTTTTGTATATTTTCCTCACAATGCTTTGTGTACAGTTTATTTATTATTTCTATATCTGTCCGAAAATGAAGAACTATAGACTTTGTCGGAGGCTAAGTATTTATTTGTAGCTACCTTCCGAGctttgggagaaaaaaaatcgGATAGATTTCAACTACAGTGCTCAACcatggaggctggtgggaggacctacagaaggacgggctcattgtaatggctggaatggaattaatggaacagagtaatacatgtggtttccatatgtttgatgtgtttaataccgttccatttattccattccagccattacaatgagacgTCCTCCCATAGATCTTGCCACCATCCTCCTCTGgcactcaaccaaatgttttagTTTCCTTATGTCTGCCATAaaagaaagcaaaaaataatcAAACTTTCTCAGTTTCCTTTCAGTCGGTCATTCGGTATAACATACTATGTAGGGTCAACGACCAATCCTATTCACCAGAAGCAAATTGAAATCACTCCCAACGGGCCAATGGATGCCGAGCCTGCCCTCGGATGCCCCGCCTTCCTGACAATAATACTGGGGCTCGCATACATTTCCTACATTTTTGCATTTGTTAACTACTTTCTGCTCTGCTTGTGTAGCTAATACTTCCTTGTTTAGGTAGGGTTTGTGTTTGCTTAACACCCACTACTTTCTGCTCTGCTTGTGTAGCTATTGCTCTGTTGCTTGAGTAAGATGGCCAATGGTAGGAGGAAGTTCAAAAAGGCTAACCAGCTGAGTTTGAACCTCCGACCATGGCCTAGGGCATGTGGTTTCACAATAAAATATTAAGAAAAGAGTGCTATCCTGCTTGCTTGGGGTGGAAACACACTTGGCTCAGGCCAGTTTGCGTGACCAATGTCTCCGGCTGGGTTCAACCTCTATTGGGTGTAGGGCTTACTTTGTGAGGAAGATTGAGGCTGCTGGCGAAGGTTCTTCCAGTGAAAATGAGAGTTTGGGAATGGGGTTGTTTGAGGCCGGCGTAGAGTTGATAGGGGTGTAATCCCAACCAAGTGAGGCTCATTCTGGTTTCTCTGGCAGTGTTCAGAGTCTGGATTCCAGGGATGATATACTATCCCTGATTGGCTCTGGAGGGTTTTCAGAGTGTCAATGGGTTGACATCAGTCTGGGGAAGCCTGAAGCACCGGCTTTGGATTTGGCGGGGGAGAGTGAACCATTGGTGCTTAATGAACCATTGTTGGAGCTGTGTCGTAGGGCGGCAGATCACCTAGGGTTGGATTGTCCTTCTCCCCTGCAGAGGAGTTCCTCCAGGTTACCTCCCGTCCCTGCAGCAGTGATGAGTGATGAGCTAAAGACAACCTGCGATTCCCCTCATTCAGCCAGGCTGGTGCTACCAGGTTGTAGTGAGTTCATTAATAGTGGGTATGGAAGAGACAGGGCTCGTTTGCACACCACCAATGGATAGAAAGCTGGCGAGTTACTTAACTTCAGAGGCTAACAAGGGGGCAAATCTGTCACactctgaccttagagagcctgtttatgtctctatttgtttggtcagggtgtgatttgggtgggcactctgttctttatttctttgtttctggccgagtgtggttcccaatcagaggaagctgtctatcgttgtctatTTTCCCACCTGTGATTGTGGGTGGTTGTCTATGTGTAGTTTGTTATTTCtggttttgttggcgacattataAATAAACTAagatgtacgctcaccacgctgcgccttggtccacttcttccgaCGAGCGTGACAAAATCCTAGCATGGTGATTCCAAATAAACAGTGCTGATCCTCAGCGGATCAGCTGGACAAAGTTATGTCTGTCCCACTGTACTATCCTGGCTGTGGGGGAAAGTATGGGGGGCGATGGTGGTGGCTCAGTGCCACCTCTGGTTGATGTTGTCCTGGATTCCTGAGAGGGACAGGAGGATGTATTTGGATGAGACAGTTTAGTCAAAAAGGTTGTTTTGCTCGGCTATGGAGTCCTTACGGGCCAGTTTCGGGAGAAACAAAAGCAGGACGTAGCTCTATGGGTCCTTTTCCAACTAAAATCCTTTGCGGTTCTGCAGTTCCGAGGCGTGAAGGAAAGGGTGCAGGCCTAAGGCGGGTTGCCGCCTTGGTGCTTCTGGGCAGCGGCGGACGTCTTGGCACAGACGGCGTGCTGGTTTGAAGGAACGCAGGGTGCAAGCAGATTCTTCTGTGACACCGGGGAAGAAACAGACCTCTCAACCctagctggaggctgggagagggGGCGTGCTCTCTGGGCCCTCCTTCCCAAGCATTTACTGTGGCAACAGTGCTCCCAAGTGGCTCGGTCAATAAGGGGCAAGTTACTGGTTGCCGAAGTCCCCGAACCCATTGTGGGCATAATAAACACAGTTCCTTCCTCACATTCAGACACGCAGTTGTCAAAAGTGGTGGAAATGAAAAACaagtatacattttttattttttataaattaaccTAAATTATCCTAGGAGATAATATGGCGCTCCCACACTGCCACGCTTGTTTCCCATATGGTGTTCATAATGAATCACAAGAGAAGTTGTTGACTCTGGCTCAGCGCTCAGCGCATTCAGTTTCTGGACCTTGCTCTAGACTCGGTGCTGAATCACGCGTTTTTGTCCCAACAGAGGAGGGTCACATTCCGGCTGGGGCCCTCGGTGCCATTTCGCTCGTGCCTGTGGTTATTGGGTCTAAAGGCCTCTATGATGGCTGTGGTGCCTCTGGGACTTCTGTTGATGCGTATATTTCAGCGCTAGGTGACTGCTAGTGTCTGGACGCATCTCGCCACTGCCATTGGTTGCTTAGGGTTTCCCCGTCGTTGCTATCAATGAGGCATTTCCTTCCGATGTTTTAGGGCCAGCATGTGTTGGTAAGGTCTGACAACAGGACGATGGTGGCGTACATCAACAGGAAGGGGGGACgaggtctctctttctcctaaACCTGGCACGTTATCTCCTCGTATGGAGCAGTGCGAATTTGCTGTCGCTCAGGGCAAAGTATCTTCCCGGATCTCTCAACGTGGGTGCAGATCTACTTTCCAGGGCGGATCCTATCTCTAAGGAGTGGAGACTGCACCCCTCAGTGGTTGCCCAGATATGGGACCGGTTTGGCAGGGCCGACGTAAAGCTTTACACATTGCGAGAAAATGCGCATTGTCGACTTCTTCTCAATGAGAGATCTGGGCACTTTGTTGTGAGCGGATGCTTGGCATATCAGTGACCTCGGACCCTGCTCTATGCGTTCCTCCAGTGGACCTGATTCAGGCCACTGTGGAGAGGGTCCGTCAGGAAGGTCTGTTGTTCATTCTGGTGGCTCCCTCGTTGGCCCAGACAACCCTGATTCCCGGAGATCCTCTGCCTGTTAGGCGGGTTTCTGATGTTCTTGCAAGAGCTATTTGAGAAGGGCCTTTCTTTTTCCATATTTAAGTTTATGTAGGGACCCGTGGAGGGGTTCCGTGTCATCAGGATCTATTGTCTATTGACACCCAAGGCCGTAGATATGGCTCTGCAGAGTTGGCCCCTGAAAGGTTGAATTTGATGACAAGGGGTTTATCCTCAAACGTGATTATGACTATACAGTTGGGCGTGTGCACCCTCTACGAGAGGGTTGTATATAAGTGGCACGCGTTTGAGGTTTGGTGTCAGGTTAAAGGAGTTTCTGATGTTCTTGCAAGAGCTTTTTGAGCAGAGCCTTTCTTTTTCCATATTCAAGTGTATACGCCAGCCATCCCGGCGTGTCATGTAGGGATTGACGGCTCTACCCAGGGGTCCTATCTGGTGGCCCTGGTGGTGTGGTTCCACATTGAGTGAGCCTCCTTTGGGACAGTTGGTGTCTGTAGACAAGACTGCCCTGCTAATGGCCTTGGCGTCAGCCAAGCATGTTGGGGATATCCACATGCTATTAGTACACCCCTGCGACTCCAAAGTGTCACAGCAGGTGCCCTGTTGTTTGGGACTTGCGGTTCCTTGTGTGAGTTCTGGCATTCCAGACTCCTTGGATCTCTGTGTGAGACTTTTTTGAACCGCGAGGGAATAGCAGTGGGGAGTAGTGGTGCTAAggttgctgcagcaccccctgaaaaatcggAATAGTAAGATGTATTTTGTTTatcttcacaaaagtagtgcactgggcctttactagtcctgtattagctgaCTGATATAGCAATCTGTAGGGTCGGCCCAAAAAATATAATTATGCAGCCCCTTCCCCCGTCGGTGACAGAATAGCAGCACCCCCAAACATGTTTCCCGCAGCTATGCGCAAGTGTCTATGGACTTGGGCCAATGTTAGGCAGCGTTTTGTCCAGGTTACCACAGTTTCCCTGTGGGTTTGAGCCTTGGGCTGCCGTGGCAATGCGCAGGCTGCCTTGGTTCATTGTGCGTGTGCTCTTTAACAAGTCACGACAGGTGTTCTGTTGTTTTGGACTTGCGGTTCCTTGTACAAGTTCTGACATGTCAGGCTCGCAAGTTAATTAAGTATTGTTCTTGGAACTGTGGGGTCTATGGACTTGTGCTGCAGTGGCAGCGTGTCAGTGTGCATTGCCAAGTTGCAGCAGGTTCTCTAGGTCCCCATATGGGGTTCAGGCAGTTCAGAATTCTTGGGTAAGTATCAGAGAAAAAGGTGACTTCTGTAAACCCATTTTGCAGCCGGTGgaagctgtgtgtgtgcttgggctGTCGTGTGGTACCCTCTGAGCCGGCTTGGAGCATGATTGAAAGTACCCATAGTGTGTTATACCGAGTGACCGACTGAAAGGAAATGTACAGTTAtgaatataactactgttccctgaaggagcgAACAAGGTATAACCTATTTTGACCCCACGCCATCAGGGGGTTTGGGCTCGCTGAAGAGCAGTACTGAATTTAGGAAGTGTATGCGATCCCTCATATTATAGCCAGGGAGGTGGGGCTTCTGAGGGCGGGCTCTGCATTAATTGGCCCGTTGGGATTGATTTCAGTTTGCTTCAGGTGAATAGGATTGGTTGACCCCCTATAATATGTTCTACCttgttccctccttcagggaacagtagttctATTCCTAACTGTATGTTTTCTAGATAGCATCAGTAGAGTAGGAGATTCCTCCTTGTTTCAGGCACAGTGTTCCTATGTTTTTCTCCGGACCAGAACTATTCAGTCTGCAGTCTCGACAATCTAAACACAACTGTTTACTATGGGTTTCAACGCTCTTACTGTACCTGTACGCCTGTCCACTTTGCCAATAAAGAAGTCTACATGCTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2431895 lncRNA downstream 7903 29989503 ~ 29991551 (-) True G2126966
TU2431893 lncRNA downstream 11236 29987806 ~ 29988218 (-) True G2126964
TU2431892 lncRNA downstream 11851 29987336 ~ 29987603 (-) True G2126963
TU2431890 lncRNA downstream 13351 29985893 ~ 29986103 (-) True G2126961
TU2431814 lncRNA downstream 20039 29978065 ~ 29979415 (-) True G2126894
TU2431919 lncRNA upstream 32521 30047809 ~ 30049693 (-) True G2126989
TU2431956 lncRNA upstream 111328 30126616 ~ 30126860 (-) True G2127025
TU2431967 lncRNA upstream 121821 30137109 ~ 30143209 (-) True G2127031
TU2431993 lncRNA upstream 179842 30195130 ~ 30223590 (-) True G2127056
TU2432043 lncRNA upstream 289135 30304423 ~ 30304655 (-) True G2127102
XM_021589803.2 mRNA downstream 510 29991593 ~ 29998944 (-) True LOC110508903
XM_021589800.2 mRNA downstream 14926 29981103 ~ 29984528 (-) True LOC110508901
XM_021589798.2 mRNA downstream 22116 29967565 ~ 29977338 (-) False LOC110508900
XM_021589799.2 mRNA downstream 22116 29967565 ~ 29977338 (-) True LOC110508900
XM_036966374.1 mRNA downstream 38913 29929290 ~ 29960541 (-) True LOC110508897
XM_021589807.2 mRNA upstream 85353 30100641 ~ 30114984 (-) True LOC110508906
XM_021589809.2 mRNA upstream 128747 30144035 ~ 30183579 (-) False LOC110508907
XM_021589810.2 mRNA upstream 128747 30144035 ~ 30183598 (-) False LOC110508907
XM_021589808.2 mRNA upstream 128747 30144035 ~ 30187260 (-) False LOC110508907
XM_021589812.2 mRNA upstream 128747 30144035 ~ 30187260 (-) True LOC110508907
TU2430565 other downstream 875712 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 920710 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 1113600 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 1306984 28692139 ~ 28692470 (-) True G2125290
TU2429926 other downstream 1336028 28662708 ~ 28663426 (-) True G2125270
TU2432085 other upstream 385925 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 419147 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 538301 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 689797 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 1228803 31244091 ~ 31244692 (-) True G2128216

Expression Profile