RNA id: TU2431895


Basic Information

Item Value
RNA id TU2431895
length 2049
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G2126966
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29989503 ~ 29991551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGGCACATTTTTGTGTTGGGTGTACAGTAGCCTCTTGGCCCAAACTGACAATGGTATTACCCTCATCAAGCCAATAGGTGGCATAATAGTGTAGGACTCCCACTGCTACCTACCTATTTTACCCCTTTTTATTTCAATGTAACAAAGCCTGTAATACAACATGATAGGGGGAGCGGGGGAAACAATATGCACCTATTCTACACTAATCCATTGCTGGTAGAGGCTATAATAAATAGCTGGCACAATGTGTAATAGGACAGGAACTGAAATAAAGTACAGTCGGTCCACAACAACATTTGACAACAGAATAAACAATTCATAGAATTTAATAAAACAGCTTTGAGAGGTCAAATCCCGTTCAAAATGGCTACATAGGGCCAACAACGAAGGCTACATTCATGGATAGCGACAGATACACAGAGTTGCACAACATTAAATTACTGTAGCCAACACGAGCTTACAAGACATGCACAATTCATATTTGCAGAAAATATAAAAGACAGTATGCAAAATAAGACATGTTTTagtaaataaaatatacatttgtcATTGGTAAATAAGTGCTTGTAAACAAGTAAGGCATTATATATTACACAGTGGATGACATGCGCTCACTGACATTCTGGTGTTTAGGTGCACTCATTGAGATTGTCCAGTTTACATGCAGATAATGCTATCCTTGTTCGGCTATGTATTACTGTCCATTGGAGAGCTGATAGTGCATTTTCCTCTGAAGAGGGCAGCAAAATTAGTCTGTTAGCCACATTTTTTAAGAGAGACCCATAGTGTTCCAGTTCTAATGGATTTTCAGCAATGAGTTTGTATTCTATTAGAACAGGCAAATAGCCTACTGGGTTTCAGTTAGTCCATATCCCCAAAGGATAACGAACCCCATGGTGGTGGGTACCTCATAGGCCTACATTGTCCTCTAGTAAGCTTGATCTTGGTTTGGGAGAAGTTGACATCCATTACTGACATGGTTCATAACCTTTTGTTTCAACTGGGCTACTTGCTCTCTAAGCACACTGGCTGTGGAGGCCAGTTCAGTGTTCTGTGTCTTAAGGTTTTTGACCTTGTCTTCAAGACGGGATATTCTCTCCAGTTTTCTTTTGCGGCACTTGGACGCCGCTATTCTGTTGCGCAGCTTTTTCCTCTCTGCTTTGATGCGCTCCTGGTTGTCCATGTCAATAGGAGACAAAGGCGGGCTGTCTCCAAAGCACTGCATGTCGGGGACCGTCTGCGGCTCGTCCTTCAACGCCTGGAGTCGTGACAGAGCCGCCGCAGCCGCCTGTTGATGCGCGCTCATCAGATGAGAAGGTGGTGGTGGGAATGGAATTGTATCCGTGGAATAATTCACTGTGCTGCCCAGTGGACTATTACCATAGCCGTTCAATGTCGTGTACACTGGCAGATCTGACGGCAAGCCGATTGGGGCTGCGTTGGAGCTGATAAGGTCCAGTCTGTCCGGCGGTACGCACGTCCCCTCGCTCAGCTGGTTCTGCTTGTGAAGATCCTCAAGCGCCTTCACGAAGCCTTCGGCAAATTCCTGTTCGTCACTGGCTGACTTTGGGTAGAGGAACTGAGAGGTTGGGATCGTGGTAACCATTCCATTCGATTGGATAATCAATCGTTCAAGGTCCGGAGTCGCCAATTTCAAGAGTCCCAAGTCCGGGGAGTTCAGAATTCCCTCTGCGTCCCGGAGATTCGGTTTCAGAATCGAGCTTTGGTCATCCAGGTTTAGACAAATGTCTTTCTTCATCATGCTGTTGTAGGAATAGAGGCTTGAAATCCCTCGAGTATTCAACACATTACAAGGGTAGAGGGTTGTTTCCATTCTAACCCCTCACACGAGGGTATGTTGAGGTTTACGCATAAACTAAGGCGATTCAACCGTTAAATCCGGCAATAAAACACACAGTTCAGGTTACAGTTTCCTGTATTTTTCCTATCTTCAAACTCTGGTTCCCCTTTACCTGTACCCCTGAGGCTAAAACAACAGTCGTGGCTTGGCTTTTCCTGTTCTTCTCGCCCGTATGAACTCTTTTC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2431893 lncRNA downstream 1285 29987806 ~ 29988218 (-) True G2126964
TU2431892 lncRNA downstream 1900 29987336 ~ 29987603 (-) True G2126963
TU2431890 lncRNA downstream 3400 29985893 ~ 29986103 (-) True G2126961
TU2431812 lncRNA downstream 10088 29977789 ~ 29979415 (-) False G2126894
TU2431823 lncRNA upstream 7913 29999464 ~ 30007313 (-) True LOC110508904
TU2431919 lncRNA upstream 56258 30047809 ~ 30049693 (-) True G2126989
TU2431956 lncRNA upstream 135065 30126616 ~ 30126860 (-) True G2127025
TU2431967 lncRNA upstream 145558 30137109 ~ 30143209 (-) True G2127031
TU2431993 lncRNA upstream 203579 30195130 ~ 30223590 (-) True G2127056
XM_021589800.2 mRNA downstream 4975 29981103 ~ 29984528 (-) True LOC110508901
XM_021589798.2 mRNA downstream 12165 29967565 ~ 29977338 (-) False LOC110508900
XM_021589799.2 mRNA downstream 12165 29967565 ~ 29977338 (-) True LOC110508900
XM_036966374.1 mRNA downstream 28962 29929290 ~ 29960541 (-) True LOC110508897
XM_021589795.2 mRNA downstream 28965 29929002 ~ 29960538 (-) False LOC110508897
XM_021589803.2 mRNA upstream 42 29991593 ~ 29998944 (-) True LOC110508903
XM_036966135.1 mRNA upstream 7903 29999454 ~ 30015288 (-) False LOC110508904
XM_036966136.1 mRNA upstream 7903 29999454 ~ 30032487 (-) False LOC110508904
XM_021589807.2 mRNA upstream 109090 30100641 ~ 30114984 (-) True LOC110508906
XM_021589809.2 mRNA upstream 152484 30144035 ~ 30183579 (-) False LOC110508907
TU2430565 other downstream 865761 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 910759 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 1103649 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 1297033 28692139 ~ 28692470 (-) True G2125290
TU2429926 other downstream 1326077 28662708 ~ 28663426 (-) True G2125270
TU2432085 other upstream 409662 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 442884 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 562038 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 713534 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 1252540 31244091 ~ 31244692 (-) True G2128216

Expression Profile