RNA id: XM_021589831.2


Basic Information

Item Value
RNA id XM_021589831.2
length 551
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110508919
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30442013 ~ 30447448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAATGAACCAGTTTACCGGAACTGGAAATGTACACTTATTTTACATAGGCGATGTTTTTAATTCAGGGAGATTTGTTTTTAAAAGCAGGTCAGGtacaatataaataaaatataaagtgTGTCGATTTATTAAGAGGTTAAAATATTTTGTATCACAGCTTGAATATATACTGTACTGCGCAACACGTGACTTCCTTTCCGGTCTAACCTGACAATATGGATGCCAGCCGCGTGCAGCCGATCAAGCTTGCTAGAGTCACCAAGGTGCTCGGGAGAACGGGTTCCCAGGGACAGTGTACCCAGGTCCGTGTGGAGTTCATGGATGACAGCAACCGGTCCATCATCAGGAATGTGAAGGGGCCAGTCAGAGAAGGCGATGTGTTGACACTTCTGGAGTCTGAAAGGGAAGCCAGGAGGCTACGATAGTGCCCGGGGATGATGAGATGCCAAACGAAAGCCTGTGGAGATGACACCCCATCAGTACACCTGAAAATGGCCCCACGTCTCACTTGTGCAAAGTTAATGAAATAAAATGTTGTTCAAGGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2432076 lncRNA downstream 1015 30440277 ~ 30440998 (-) True G2127133
TU2432116 lncRNA downstream 12131 30429657 ~ 30429882 (-) True G2127172
TU2432115 lncRNA downstream 12423 30428922 ~ 30429590 (-) True G2127171
TU2432112 lncRNA downstream 18935 30422869 ~ 30423078 (-) True G2127168
TU2432066 lncRNA downstream 110324 30331386 ~ 30331689 (-) True G2127124
TU2432162 lncRNA upstream 36283 30483731 ~ 30484449 (-) True G2127212
TU2432171 lncRNA upstream 55294 30502742 ~ 30502998 (-) True G2127220
TU2432173 lncRNA upstream 62245 30509693 ~ 30509929 (-) True G2127222
TU2432181 lncRNA upstream 63282 30510730 ~ 30511163 (-) True G2127226
TU2432456 lncRNA upstream 133557 30581005 ~ 30583262 (-) True G2127470
XM_021589830.2 mRNA downstream 25369 30409271 ~ 30416644 (-) True angptl4
XM_021589828.2 mRNA downstream 40475 30399711 ~ 30401538 (-) False LOC110508917
XR_002471374.2 mRNA downstream 137601 30301087 ~ 30304412 (-) True LOC110508912
XR_002471372.2 mRNA downstream 162773 30273893 ~ 30279240 (-) True LOC110508910
XM_021589814.2 mRNA downstream 188643 30188885 ~ 30253370 (-) True mast3a
XM_036967076.1 mRNA upstream 182494 30629942 ~ 30649835 (-) False LOC110508217
XM_036967077.1 mRNA upstream 182494 30629942 ~ 30649835 (-) False LOC110508217
XM_021589842.2 mRNA upstream 253094 30700542 ~ 30704777 (-) False LOC110508927
XM_021589843.2 mRNA upstream 257637 30705085 ~ 30706591 (-) False LOC110508928
XM_021589856.2 mRNA upstream 458431 30905879 ~ 30907975 (-) True ptger4c
TU2432121 other downstream 7159 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 40206 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1318271 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1363269 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 1556159 28885468 ~ 28885854 (-) True G2125723
TU2432439 other upstream 106141 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 257637 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 796643 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 871835 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 871893 31319341 ~ 31323364 (-) False G2128242

Expression Profile