RNA id: TU2432112


Basic Information

Item Value
RNA id TU2432112
length 210
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2127168
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30422869 ~ 30423078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacttgttgtaaatccagccacaatgtccgatttcaaaaaggctttactgcgaaagcacaccaaacgattatgttaggtctgtacctagtcacagaaaaacacagccatttttccagccaaagagaggagtcacaaaaagcagaaatagagataaaatgaatccctaacctttgatgatcttcatcagatgacactcaaaggacttcatg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2432066 lncRNA downstream 91180 30331386 ~ 30331689 (-) True G2127124
TU2432058 lncRNA downstream 97407 30323398 ~ 30325462 (-) True G2127116
TU2432050 lncRNA downstream 109161 30313477 ~ 30313708 (-) True G2127109
TU2432049 lncRNA downstream 110481 30312140 ~ 30312388 (-) True G2127108
TU2432047 lncRNA downstream 111328 30311204 ~ 30311541 (-) True G2127106
TU2432115 lncRNA upstream 5844 30428922 ~ 30429590 (-) True G2127171
TU2432116 lncRNA upstream 6579 30429657 ~ 30429882 (-) True G2127172
TU2432076 lncRNA upstream 17199 30440277 ~ 30440998 (-) True G2127133
TU2432069 lncRNA upstream 18935 30442013 ~ 30447253 (-) False LOC110508919
TU2432070 lncRNA upstream 19919 30442997 ~ 30447253 (-) True LOC110508919
XM_021589830.2 mRNA downstream 6225 30409271 ~ 30416644 (-) True angptl4
XM_021589828.2 mRNA downstream 21331 30399711 ~ 30401538 (-) False LOC110508917
XR_002471374.2 mRNA downstream 118457 30301087 ~ 30304412 (-) True LOC110508912
XR_002471372.2 mRNA downstream 143629 30273893 ~ 30279240 (-) True LOC110508910
XM_021589814.2 mRNA downstream 169499 30188885 ~ 30253370 (-) True mast3a
XM_021589831.2 mRNA upstream 18935 30442013 ~ 30447448 (-) False LOC110508919
XM_036967076.1 mRNA upstream 206864 30629942 ~ 30649835 (-) False LOC110508217
XM_036967077.1 mRNA upstream 206864 30629942 ~ 30649835 (-) False LOC110508217
XM_021589842.2 mRNA upstream 277464 30700542 ~ 30704777 (-) False LOC110508927
XM_021589843.2 mRNA upstream 282007 30705085 ~ 30706591 (-) False LOC110508928
TU2432085 other downstream 21062 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1299127 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1344125 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 1537015 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 1730399 28692139 ~ 28692470 (-) True G2125290
TU2432121 other upstream 11357 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 130511 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 282007 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 821013 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 896205 31319283 ~ 31320623 (-) False G2128242

Expression Profile