RNA id: TU2432481


Basic Information

Item Value
RNA id TU2432481
length 1172
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC110508217
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30629942 ~ 30649835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGAGAAAcccatagacacagagagagaggacggtCTGTGTGGTGCCTTACAAAAGCCAATCTGTCAAGAGCCTAGTCTTCTTTTTAAATCTCAATTCAATTTGGTGGACTCTGAGGAGAGAAAGCCACATCCCTTCCCCCTCGCCTGCCTCAGCCACGGGAAGCACCCACACGGTCGGAGCACAGGGCTAGGCCGCAAGTCGTTAGTGCTCGGTGGGCAAGCACTGACAAAAGACTGGAGGGAGAGGCTAACACGGATGCTTAGAAAGCAGTTTCTCTGACTTCTGAAGGGTGGAAAGGACGCTTTTAGGATTTCTAACCTAATCCGTGCAGTCTATTTTTGGAGGGACTGAAACAGACTGGTCTAGCCACTACCACAGAGGATATTGCTACAGCCTGTCTCTTGCCTCCCTCTGGAACAACAAACAAGGAAGAGAGGGCACTTCCTTGAGTTGAAGACCATTTTAAAGAGAGCCAGAAAGACTGGTTGATTTAGTAAAACAGAGGGGGTAGACCGTAGCCACGGCTAAGACTTGATAGTAGTTCTTTGTGTGCCTTGAGGATATAGCCACATACAGTGTGCTGTGAAACATCAAGTTGTTTTGCTAGTGGTGACCTGGAAGGGCTCGTTTTGTCAACCAGAATGTTGGTGGTGCTCAGAGGATTGCTGGAAAATCTGTCTCTTGCCTCACTCTGTCTGTGCCCTCCCTCTCCATGGCTGCAGGGGTGATCTAGCTAAAAGAAGACGTTGACATATTATATGAATATACTTGCAACGGTTCTGTGTCTTGGCTGAAGTGTAAACCATTCGACTGAACAGCAAGCTCCTCTAAAAGACAGCCGTCGAAGGATTTGGTgccaaataaatacataacaaaaaacacaaaaagagTGACTAATTCAATAAGGAGAAAGAAGAAAACTGGGCATGGGGCAAAACAAAAGTTTCTAGAGTGAAAAGCGAAACAATTTCCAGGTCAtagtggaaggggaggagacaaaaCAGCTCTAGTGGTTTTTTTGGAACAAACATTCTACACCATACAATTTTTACACCCATTTATACTCTACATTAAAAGAGGGTGTGGGTAATTTTCTACCTTTGACTATTTAGTTTCTGACCCACTTTGAGGACCAAAAAGCCAAAAGAGAATATTTTATGAAAAGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2432488 lncRNA downstream 3667 30644334 ~ 30644614 (-) True G2127500
TU2432486 lncRNA downstream 5956 30642064 ~ 30642325 (-) True G2127498
TU2432485 lncRNA downstream 6266 30641631 ~ 30642015 (-) True G2127497
TU2432482 lncRNA downstream 15351 30632714 ~ 30632930 (-) True G2127494
TU2432480 lncRNA downstream 16796 30629942 ~ 30631485 (-) False LOC110508217
TU2432491 lncRNA upstream 8743 30658507 ~ 30661740 (-) False G2127503
TU2432492 lncRNA upstream 10043 30659807 ~ 30661740 (-) True G2127503
TU2432499 lncRNA upstream 17959 30667723 ~ 30667989 (-) True G2127507
TU2432500 lncRNA upstream 19049 30668813 ~ 30669133 (-) True G2127508
TU2432502 lncRNA upstream 21064 30670828 ~ 30671191 (-) True G2127510
XM_021589831.2 mRNA downstream 200833 30442013 ~ 30447448 (-) False LOC110508919
XM_021589830.2 mRNA downstream 231637 30409271 ~ 30416644 (-) True angptl4
XM_021589828.2 mRNA downstream 246743 30399711 ~ 30401538 (-) False LOC110508917
XR_002471374.2 mRNA downstream 343869 30301087 ~ 30304412 (-) True LOC110508912
XR_002471372.2 mRNA downstream 369041 30273893 ~ 30279240 (-) True LOC110508910
XM_021589842.2 mRNA upstream 50778 30700542 ~ 30704777 (-) False LOC110508927
XM_021589843.2 mRNA upstream 55321 30705085 ~ 30706591 (-) False LOC110508928
XM_021589856.2 mRNA upstream 256115 30905879 ~ 30907975 (-) True ptger4c
XM_021589860.2 mRNA upstream 328955 30978719 ~ 30980452 (-) False LOC110508937
XM_036966461.1 mRNA upstream 329219 30978983 ~ 30980313 (-) True LOC110508937
TU2432439 other downstream 93094 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 213427 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 246474 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 1524539 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1569537 29078039 ~ 29078744 (-) True G2125813
TU2432521 other upstream 55321 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 594327 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 669519 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 669577 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 669577 31319341 ~ 31323364 (-) True G2128242

Expression Profile