RNA id: XM_036966167.1


Basic Information

Item Value
RNA id XM_036966167.1
length 3240
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110508219
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31433122 ~ 31466447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGTGAGAGAGTGTGAATAGAATCTGGCTGAGAGAATGGGCTCTGGGTTGAGTTGTTGCATAGCTCCTATGGGCGGACGCTGATGTGTTTCCACACAAACCACAGCCTTTCGCTCCCAAAGTGAAAGCAGTGGGACATTTATTTATGTTGCTGCTTCATATATGTGGACTACAGAACAACTTTTCTTCCCTCAGCGAAAAAAGACGCAAGGACTCAAGGAAAGCCATGGAAAGTCAAGTATTTCCAATATGACCTATGGTTTGGTCACTGAATAGGTTATTTTTGACGCACGAGAGGGAAACTTAAAACAAGGCTGTTTTTGGAGTTCCACCTCCCCTGTCTCCGTACAGTTTGATTCAAAGTCAAAAGCCAAGATGGCCGCCGATTCCGTGCAGGGCGACGCCAGGGGCCAGCTGGTGTCGGAGCGGCTGGGCCTGGGCCACAACCTGGACCTGTCGGACACCATGGTGCAGCAGAAGCTGGATGAGATCAAGGAGCAAATCCGCCGCGAGATCCGCAAAGAGCTGAAGATCAAGGAGGGTGCGGAGAACCTGCGCAAGGTCACCACGGACAAGAAGAGCCTGGCCTATGTGGACAACATGCTGAAGAAGTCCAACAAGAAGGTGGAGGAGCTCCACCAGGAGCTCCAGGAGCTCAACGCCCACATTGTGGTCAAGGACCCCGATGACCTGCTGGAGTGCCCTTTGACCCCGGACACCCCAGCTAGCGAGGCGAGGATGTGCACCAGCAACAGCCGCTTGGCCGCCCTGAAGAAGCAGAACGACATTGAGCTGAAGGTCAAACAGGGGGCAGAGAACATGATCCAGATGTACTCCAACGGCTCTTCCAAGGACCGGAAATTGCTAGCGACTGCTCAACAGATGCTCCAGGACAGCAAGACAAAGATTGAGTTCATCAGGATGCAGATCCTCAAAGGCAGCCAGGCCAGCGAGTTGAGCTTCGATAACAACGACGTCatggCCAAGCCCATCATCAGCCCGCTGGACCTGCGGGTAGAGGAGCTGTGTCACCATGCCAGGATAGAGTCTGCCGTGGCCGAGGGTGCCAAGAACGTAATGAAGCTCCTGGGCTCTGGCAAAGTCACGGAGAAGAGGGCACACTCAGAGGCCCAGGCCCGATTCAACGAGTCCAGTCAAAAGCTGGACCTGCTCAAGTACTCCCTGGAGCAGAGGCTGAGTGAGCTACCCAAGAACCACCCTCGCAGCACCAACATCGTGGAGGAGCTGTCCCTCATGTCCTCGCCTGCCCTCAGCCCGCGCTCCAGCATCATCTCCACCCAGAACCAATACAGCACCGTGGCCAAGCCCGCCGCACTCACAGGCACGTTAGATGTCAGGCTCATGGGCTGCCAGGACCTGCTGGAGAACGTTCCGGGTCGTTCCAAAGTCGGTGCTGTGCTGCTGCCTGGCTGGAGCCCCAGCGAGACGCGCTCCTCCTTCATGAGCCGGGGGAATCGCAACCGAGGTGCCAGCGCACGGAACCTCTCCAAGAGTGAAGACCTCTCAAatgaaatcagtgCTGTGCTGAAGCTGGACAATACAGTGGTGGGACAGACCAACTGGAGACCTGTCAGTAACCAGTCCtgggatcagaagtttacattggagctggacaggTCTCGTGAGCTGGAGATCTCGGTGTACTGGAGAGACTGGCGCTCGCTGTGTGCTGTCAAGTTCCTGCGACTGGAGGACTTCCTGGACAACCAGCGTCACGGCATGTGTCTCTACCTGGAGCCTCAGGGAACCCTGTTTGCAGAGGTCACATTTTTCACCCCTGTCATTGAGCGGCGACCCAAACTGCAGAGACAAAAAAAGATCTTCTCAAAGCAGCAAGGGAAGACGTTCCTGCGTGCTCCTCAGATGAACATAAACATTGCCACCTGGGGCCGCCTGGTCAGAAGGGCCTTACCCACAGTCAGCCCACAGGTGGCTGAGACTGGGACCAGCAGTCTGCCAGGATCTCCAACACCCAccagtcccATCAGTGAACCGTTGGTGACCAAGCTGGACTTTGACAAAGAGCCCACCCCGGGACCCAAGCATTACCCTGTACCCGCTGGCATCAGAGAACCACTGGCACAGGACAACAAACTGCCCGACAAGGAGGAAGTACAGGACGCCCTGGCATCGTTTGACTTCCTGAACAAGAGGAACAGCATAGCTGTGAAGTCGTCAGACCTAGACAGACTAGACAAGGTAGCAGAGCAGGAGATCCAGCCTCCAGGCCTGGAGCTCACAGCCATACAGAAGGAAATAAGGGAAGAAGAACAATTTCGGTTTAGTCTCAGAGACTTTAAATGTGTTGCAGTCCTTGGTCGTGGTCATTTCGGAAAGgtattGTTAGCCGAGTATAAAAGCACAGGAGAGATGTTCGCCATCAAAGCCCTGAAGAAAGGAGACATTGTGGCTCGTGACGAGGTGGACAGtctgatGTGTGAGAAGCGTATATTTGAGGCGGTGAACAGCGTGCGCCACCCGTTCCTGGTCAACCTCTTTGCCTGCTTCCAAACGCAGGAGCACGTGTGCTTCGTCATGGAGTACGCTGCCGGGGGAGACCTGATGATGCACATCCACGCTGACGTCTTCTCCGAGCCCAGGGCCATATTTTATGCAGCTTGTGTCGTATTGGGATTACAGTTTTTACACGAACATAAGATTGTGTACAGAGATCTGAAGCTTGACAATCTGCTCTTGGACACTGAGGGCTATGTAAAAATAGCTGACTTTGGCCTTTGCAAAGAGGATAATTCAGATGAAAGGTAAGAGTCGGCCGACTTACGTGGATTCATGGAtgcacagaacttctggatcagatggagttaaggaagagaaagcagcgcgatcaggcgatggcaatttcctccttttatggagttgagatctgtcggacatttccacctgacctaattaaagcgcccctggcccagctgagtaaatggcaatgaattaaaggagtattccaccaactccatgggccttttctagAATAACCTTACCCTGACTCTATATAAGGTctacagaccccttgacttgatccacattttgttacgttacaggcatatttttaaatggattaaataaacaaAGGTCCTCATCAATAtaagcacaataccccataatgacaaagcaaaagcaggtttttagaagatttaacaaatgtattaaaaatgtacattttatttacataagtatacagaccctttgctatgagactcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433368 lncRNA downstream 47207 31394854 ~ 31395201 (-) True G2128292
TU2433345 lncRNA downstream 56167 31386025 ~ 31386241 (-) True LOC110508218
TU2433364 lncRNA downstream 56973 31385205 ~ 31385435 (-) True G2128288
TU2433342 lncRNA downstream 60423 31381757 ~ 31381985 (-) False LOC110508218
TU2433338 lncRNA downstream 70620 31371589 ~ 31371788 (-) True G2128266
TU2433383 lncRNA upstream 1873 31468320 ~ 31468556 (-) True G2128307
TU2433362 lncRNA upstream 24747 31491194 ~ 31494425 (-) True G2128286
TU2433402 lncRNA upstream 35830 31502277 ~ 31502922 (-) True G2128326
TU2433354 lncRNA upstream 37617 31504064 ~ 31504876 (-) True G2128278
TU2433407 lncRNA upstream 45337 31511784 ~ 31512006 (-) True G2128330
XM_021589883.2 mRNA downstream 23318 31411807 ~ 31419090 (-) True LOC110508955
XM_021589882.2 mRNA downstream 31504 31406699 ~ 31410904 (-) False znf326
XM_036966713.1 mRNA downstream 31504 31406699 ~ 31410904 (-) True znf326
XM_036966920.1 mRNA downstream 44723 31374369 ~ 31397685 (-) False LOC110508218
XM_036966921.1 mRNA downstream 45242 31374369 ~ 31397166 (-) False LOC110508218
XM_021589886.2 mRNA upstream 4847 31471294 ~ 31479415 (-) False LOC110508958
XM_021589885.2 mRNA upstream 4847 31471294 ~ 31490838 (-) True LOC110508958
XM_021589887.2 mRNA upstream 39067 31505514 ~ 31508287 (-) True cldn18
XM_021589889.2 mRNA upstream 41959 31508406 ~ 31511223 (-) True LOC110508960
trnap-ugg-71 mRNA upstream 55054 31521501 ~ 31521572 (-) True trnap-ugg-71
TU2433312 other downstream 119044 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 119044 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 121785 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 197716 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 735863 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 245161 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 416268 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 556611 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 556611 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 595602 32062049 ~ 32165022 (-) False asip2b

Expression Profile