RNA id: XM_021589885.2


Basic Information

Item Value
RNA id XM_021589885.2
length 3224
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110508958
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31471294 ~ 31490838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACAGACTTGACTGTTGACGAATGAAAAGCCTATTCCGTTTCGTGGATTGTTGGTTTCACCAATAGGGGGTTTGTAGTAATAAGTCCTCCGACGAAGGTAGGCGTGTTAAGTGAACTGAACGGGACAGCTCTACAGAGAAAGACTCGCAGAGACCGAGGAACACAAACCCGCTTCTGTTGACACCCTTGGGGGGGgacaacatctcaacatcaagaaTACGGCATTGAGGTTGCATGCagagtatattatagtatgaaaCATCATTTGGACCTGAGTGTGTTTCCTACTGCACAACCAGGGTTTTAACAGACACTCGTTCGCTCTGTAATTGACAATTCCATTACATTTTTATGTAGTATTTTCTAAACCTGGAATGACCTGTTCTTACTGGATTGTTTGATGGGGCTTCTAAGAATCATGATACCGCCCAAGTTTCAGCTTCTGGCGCTGTTGACATTCGCAGTGGCCATGTTCTTCTTGGAGAACCAAATCCAGAAGCTGGAGGAGTCTCGAGGAAAGCTAGAACGGGCCATCGCGAGGCACGAGGTGCGTGAGATCGAGCAGCGGCACACACAGGATGGCCTACGGGAGCGGGAGGCCCCCTCGGTGGCCGACAGCGAGGACGTGGTGGTTATCTACAACCGCGTGCCCAAGACGGCCAGTACCTCCTTCACCAACATCGCCTACGACCTGTGTGGCAAGAACCACTACCACGTGCTGCACATCAACACCACCAAGAACAACCCGGTCATGTCCATGCAGGACCAGGTGCGGTTTGTGAAAAACGTGACAGAGTGGAGGGAGATGAAGCCGGCGTTCTACCACGGTCACGTTTCTTTCCTGGACTTTACAAAGTTTGGAGTAAAGAAGAAGCCCGTCTACATCAATGTGATCCGCGACCCCATCGAGCGCCTGGTGTCCTACTACTACTTCCTGCGTTTTGGGGACGACTACCGGCCCGGCCTGCGGCGCCGGAAACAGGGGGATAAGAAGACCTTTGATGAGTGTGTGTCGGCGGGAGGCTCAGACTGCGCCCCGGAAAAGCTGTGGCTGCAGATCCCCTTCTTCTGTGGTCACTACTCTGAGTGCTGGAATGTGGGCAGTCACTGGGCCCTGGAGCAGGCCAAGTATAACCTGGTCAATGAGTACCTGCTGGTGGGGGTGACAGAGGAACTGGAGGACTTTGTTATGATGCTGGAGGCGGCGCTGCCACGCTTCTTCAGGGGCGCCACAGAGCTCTACAGAACAGGGAAGAAATCCCATCTGAGGAAGACGAGTGAGAAGAAGCCGCCGACCAAGGAGTCCATCGCCAAGCTGCAGCAGTCGGCCATCTGGAAGATGGAGAACGAGTTCTACGAGTTTGCCCTGGAGCAGTTCCAATTTGTCCGGGCTCACGCCGTCCGGGAGAAGGATGGGGAACTCTACCTGCTGGCCCAGAACTTCTTCTACGAGAAGATCTACCCCAAAACTAACTAACTAATGCACATGGAAGATGGACCATTCATCTAGGCTTCATCCCGTAGTCACATACActggacagaggagaagaggaagactAATATAATCAGTGGGTCTGTGGAACTGTCTGTGTTGGACGTTAGTCAGCAGTTTCTGAATGTCGCCCACTTAACTAActgactcctcctcctcgtctccaTAGTAGCCGACAGAACTAGGAAGTGGCCTCTTCCTGGTGCGAGATCATGCCAATAGGTCATGTTCCCACCAGCATTCCAGGTCCAGGACTCCCTTTATACTTCCAGGTGAAAGGTCACAGGAGTGGTATGCTCGACGGACACATGACAGGAGACGAGTCTACTTGGCAGCTGCCCATGTTCTCTTTCTTCTGATCACATGATTTATATTTTCCGTCCAAGGGGAGGGGTTTTATTGGCCGTGTTCTGTTTGGTTTAGTTTTTGTGGTTTATTCTACTTTACTATCATCGTCTATGGGAACATTGTCGACCCAGTTTTATACGTTAAGAGGGTGTCATTTTTAATGTTGTAACCCTCCCACTAATAACTTAAAAGTTGACTACTATGTTATCTTGGAGTTTACCTATATGAACTGCAGACATTTTTCCAAAATCTAAATCCTGTGACCTCCATAGACTTGAGTGACAGATGCACCCTGTTCACGACTGTGGTACTACTATTTAGTGTTtgatactatactatacttaTTTAGTTGTTTTCTGACTCTTTCACCCGGTTGGAATATTGCTAGGAGGAATGTGAAGTGTTTGCACATGATTTAATTAAACTAAGGAAGAAGACAGACAACCGACCATTTAGCTGCTGTACAAAATACTAATTTAAATCTGGATCAAACAGTTATTCTATATCAAGAGGACTTACTATTATTACCTTATTTCAGCTCTGGTATAACACATTTAGTTAATGAGCCATTTATAGATTTTTCTCTCGACTTTTGTTATTTTCTCTATATTGGCAAGAGACCATTTAATTTTTGTGCTTTTACTGTCATAACCCAAAGATCTCCCAAATCTGTTGTTTTGCTGCTTTAAACTCATGAACTTGCTGAATTTCTTGACATGATATTTGATGACTGAATTTAGATGTTATTTTGCTATTCCCCTTAGGATCATAACTGGCAACCCATTTTCATTAAATTTGTATGGTTATTATGTAAGACTATAACCTAACCAAACCCATGCGTGCACTGCAAACTGCTGACACTGCTAATGCCAATTTCGGTTAATCTATTGATGGCCTGCTAATACAGACACTGATCAGATCATCTCTGTGACTCAGCCCAGCAACAGTGACTGCAGTGCTGGAGCACTAGAACAGCCTAcaacagcgttgtgaagaagtgACTTTCCCAACTAATCAGGCCCCATCCCAGACGTTGAGGCAGCAGAAGTACTAAAAGCAAAGGGATTTTGTTCACAGGGGACTATAAAAGAGAGGTCGACTCCCCGAGGTGAGTTGTAATGTTGGCATGGTAGGCAGGCAGTAAAAACCAAACATTGAGATCATGTCAGACACATTGCTTGTGTTCTCATGTCATTAAAGAGGCACTTCACCATGTGACATCAGGAGTCATTTTCTTAGTcatcttttcttttctttttactaCAGAACGCTGTTACTGTACGGTGCTAAAGGGAATGAATATGTGAGGTGAGGTACAAAAGTAGTGAAGCGTCCCTTTTTAAGGTCTGTTAAACAGAAAGTATTGTAGTTTTTGTTACATGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K02513 HS2ST1; heparan sulfate 2-O-sulfotransferase HS2ST1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433383 lncRNA downstream 2738 31468320 ~ 31468556 (-) True G2128307
TU2433368 lncRNA downstream 76093 31394854 ~ 31395201 (-) True G2128292
TU2433345 lncRNA downstream 85053 31386025 ~ 31386241 (-) True LOC110508218
TU2433364 lncRNA downstream 85859 31385205 ~ 31385435 (-) True G2128288
TU2433342 lncRNA downstream 89309 31381757 ~ 31381985 (-) False LOC110508218
TU2433362 lncRNA upstream 356 31491194 ~ 31494425 (-) True G2128286
TU2433402 lncRNA upstream 11439 31502277 ~ 31502922 (-) True G2128326
TU2433354 lncRNA upstream 13226 31504064 ~ 31504876 (-) True G2128278
TU2433407 lncRNA upstream 20946 31511784 ~ 31512006 (-) True G2128330
TU2433413 lncRNA upstream 32698 31523536 ~ 31523871 (-) True G2128336
XM_036966167.1 mRNA downstream 4847 31442408 ~ 31466447 (-) True LOC110508219
XM_036966166.1 mRNA downstream 4848 31433122 ~ 31466446 (-) False LOC110508219
XM_036966165.1 mRNA downstream 4849 31433122 ~ 31466445 (-) False LOC110508219
XM_021589883.2 mRNA downstream 52204 31411807 ~ 31419090 (-) True LOC110508955
XM_036966713.1 mRNA downstream 60390 31406699 ~ 31410904 (-) True znf326
XM_021589887.2 mRNA upstream 14676 31505514 ~ 31508287 (-) True cldn18
XM_021589889.2 mRNA upstream 17568 31508406 ~ 31511223 (-) True LOC110508960
trnap-ugg-71 mRNA upstream 30663 31521501 ~ 31521572 (-) True trnap-ugg-71
XM_036966526.1 mRNA upstream 51920 31542758 ~ 31560379 (-) False stk25b
XM_036966527.1 mRNA upstream 51920 31542758 ~ 31560379 (-) False stk25b
TU2433312 other downstream 147930 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 147930 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 150671 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 226602 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 764749 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 220770 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 391877 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 532220 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 532220 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 571211 32062049 ~ 32165022 (-) False asip2b

Expression Profile