RNA id: XM_036966527.1


Basic Information

Item Value
RNA id XM_036966527.1
length 1941
RNA type mRNA
GC content 0.52
exon number 11
gene id stk25b
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31542758 ~ 31560379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGCGCATGCGCTGTTCAACCCATTATTTTGTTCTCCTCAAGCCACAAATAAAGAACAGGCTGAGTGTTCTTTGATATGAATTAAATATTAATATACGGAAACATTTAGTTCATGTTCAATGTCACTCTTATACATGGAGTTACACGATACATAGCTTTGCATTTTGGCCGGGCTGTAAAGCCCGCCGTCGGGGGATTCGAGGCCGAAAACACTGCGGAGTGACAGCACGATAGCTTGGGTGTTTAGCTATTTGGTTAGCTAGCCTGCTAACGGAAGGGGTTCGAGAGGAGGGAAAATAAGATAGAGGAATTTTGACAACTCCGTCTTTCAGGCAGAAAGGGCTGCGGCTGCCCTTTTCCTGTCAAACCTGCCGAGCGGATGGCGCACCTACGCGACATGCAGAACCAGAATTCCAGGCTGGATCCTGAGGAATACTTCACCAAGCAGGAGCGCATTGGGAAGGGCTCCTTTGGAGAGGTCTACAAGGGCATCAACAACCGCACCAAAGAGGTAGTGGCCATCAAGATCATTGACCTGGAAGAAGCCGAGGACGAGATCGAAGACATACAGCAGGAGAtcactgtactgagtcagtgtgacAGCCCCTTTGTCACCAAGTACTATGGCTCCTACCTGAAGGGCACTAAGCTGTGGATCATCATGGAGTATTTGGGTGGGGGATCAGCTCTGGACCTGCTACGTCCTGGGCCTCTAGAAGAGACCTATATCGCCACCATACTGAGGGAAATACTGAAGGGACTGGAGTACCTGCACTCTGAGAGGAAGATCCACAGAGATATCAAAGCTGCCAATGTGCTGCTGTCAGAGCAAGGCGACGTGAAGCTGGCAGATTTTGGCGTGGCGGGCCAGCTGACCGACACCCAGATCAAGAGGAACACATTCGTGGGCACTCCCTTCTGGATGGCGCCCGAGGTCATCAAACAGTCGGCGTACGACTTTAAGGCGGATATCTGGTCCCTGGGCATCACGGCCATTGAGCTGGCCAAAGGGGAGCCCCCCAACTCAGACCTGCACCCCATGAGGGTCCTCTTCCTCATTCCTAAGAACACCCCTCCCACCCTGGAGGGATCCTACAGCAAGCCCTTCAAAGAGTTTGTGGAGGCCTGCCTCAATAAAGACCCGCGCTTTAGGCCAACAGCCAAGGAGCTGGTGAAGCACAAGTTCATTACACGCTACACCAAGAAGACAGCCTACCTGTCGGAACTCATCGACCGCTACCGTCGCTGGAGGTCCGAGGGCCACGGGGAGGAGTCCAGCTCAGACGACTCAGATATGGATGCTGATGGTGACGACAACCAGAGTCCCGTGTGGACCTTCCCCACAGTCCGACCCAGCTCCATGAACAAACTACAGAAGGGATACACACACTCCGATACAGAGtcTGCAGATTCGGTGAAACGCCAACCCAAGTCACAGTGTCTGTCGGCATTGGTCACTCCCATTTTCAAAGAGTTAAAGGAGAAGCGGAGGGCTGCTGGAGGTGGCGTGGGGGCCATTGAAGAGCTGGAGAACGCCTTTAATCTGGCCGAGGAGTCCTGTCCCGGCATCTCAGACCGTCTCGTCACACACATGATGGAGAGGGTCTGCAGGTTCTCTCTCAATGGTAACACCACCCCCTCCTCGCGGTGAACCCCTGCTGGCTGCTACTCCAAATCCCCTTCCGTCTACTTCTATTCCCCGTCAGACCgtccaacaccccccccccccccatggaccACGAAAACCCCTCCTCTGCCCCCTAGTCCACCTGACCAATCTCCCAGAGAACTTTTAATTAGTTATGAttaaatatttttacagtttttctTTATAGAACGGAGAGTATTTAAGAAAAAAGAAAGCCACGACATTAAGAGTGCTGTGTATACCTGTTAGATCGAGAGAGAAACAATCCTAAAATAAAGTCTATGGAAACGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433418 lncRNA downstream 1251 31541291 ~ 31541507 (-) True G2128341
TU2433413 lncRNA downstream 18887 31523536 ~ 31523871 (-) True G2128336
TU2433407 lncRNA downstream 30752 31511784 ~ 31512006 (-) True G2128330
TU2433354 lncRNA downstream 37882 31504064 ~ 31504876 (-) True G2128278
TU2433402 lncRNA downstream 39836 31502277 ~ 31502922 (-) True G2128326
TU2433435 lncRNA upstream 10098 31570477 ~ 31572013 (-) True G2128353
TU2433392 lncRNA upstream 13105 31573484 ~ 31593171 (-) True G2128316
TU2433484 lncRNA upstream 55989 31616368 ~ 31619060 (-) False G2128385
TU2433485 lncRNA upstream 55989 31616368 ~ 31619525 (-) True G2128385
TU2433486 lncRNA upstream 59361 31619740 ~ 31620149 (-) True G2128386
trnap-ugg-71 mRNA downstream 21186 31521501 ~ 31521572 (-) True trnap-ugg-71
XM_021589889.2 mRNA downstream 31535 31508406 ~ 31511223 (-) True LOC110508960
XM_021589887.2 mRNA downstream 34471 31505514 ~ 31508287 (-) True cldn18
XM_021589885.2 mRNA downstream 51920 31471294 ~ 31490838 (-) True LOC110508958
XM_021589886.2 mRNA downstream 63343 31471294 ~ 31479415 (-) False LOC110508958
trnav-aac-156 mRNA upstream 347 31560726 ~ 31560798 (-) True trnav-aac-156
XM_021589895.2 mRNA upstream 16499 31576878 ~ 31584196 (-) True thap4
NM_001160492.1 mRNA upstream 119044 31679423 ~ 31694153 (-) True nilt2
XM_036966696.1 mRNA upstream 148288 31708667 ~ 31715814 (-) False LOC110508968
NM_001160493.1 mRNA upstream 158310 31718689 ~ 31763048 (-) False nilt3
TU2433312 other downstream 219394 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 219394 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 222135 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 298066 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 836213 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 151229 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 322336 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 462679 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 462679 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 501670 32062049 ~ 32165022 (-) False asip2b

Expression Profile