RNA id: TU2434163


Basic Information

Item Value
RNA id TU2434163
length 610
RNA type TUCP
GC content 0.48
exon number 4
gene id asip2b
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32062049 ~ 32187519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGAGAACCTTCTGAGCTGCGATATTGATAGACTACCATATTaagacatttaaaataaaaaaatatattcattTCTCCAGAGTGGATAAAAAGTAACCTGTAAGTAGCCTATCCCAACGTGTCAAATTTAATAGTGTGCTCTCACCTGAACAGTGCTGCAGTCCGTAACATTATTATTAACCCGGATTCAGGTTACAAGATTGGAAGTGGAGATGTTGGGAAAACATTTTCTCTGGGGTTGTCTCCTTTCGGTGTCAATTCCGTTATGTTTCGCCGAAGACCTGAAGAGGGATGCGCATATACAGCATGAAAATGATTCAGTTTGGAGCCAAGGGAAACCCGGAAGACTGTTTGCCAGGAGACGGATTTTGCCACATCAGGGACAGCACCACGTTGAATTTCAGAAACACGAGCCTGTAGCCCCTGCCCGGCGGTGTGGCCGTCTGATGGATAGCTGTGCCCCTCACACCCCCTGCTGTGACCCCTGTGCTTCCTGCCGCTGTCGCCTCTTCAACACCATCTGCCACTGCTGGAGACTGGGCCCACACTGCCCCAAGAAGacctagacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434132 lncRNA downstream 32824 32023058 ~ 32029225 (-) False LOC110508982
TU2434140 lncRNA downstream 32824 32023058 ~ 32029225 (-) True LOC110508982
TU2434118 lncRNA downstream 33411 32023058 ~ 32028638 (-) False LOC110508982
TU2434137 lncRNA downstream 33411 32023058 ~ 32028638 (-) False LOC110508982
TU2434108 lncRNA downstream 33491 32023058 ~ 32028558 (-) False LOC110508982
TU2434272 lncRNA upstream 75860 32240882 ~ 32243524 (-) True LOC110508996
TU2434304 lncRNA upstream 102685 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 132171 32297193 ~ 32297394 (-) True G2129038
TU2434324 lncRNA upstream 140277 32305299 ~ 32305562 (-) True G2129041
TU2434327 lncRNA upstream 144388 32309410 ~ 32309627 (-) True G2129044
XM_021589916.2 mRNA downstream 675 32034823 ~ 32061374 (-) False LOC110508983
XM_036966565.1 mRNA downstream 675 32034823 ~ 32061374 (-) False LOC110508983
XM_036966566.1 mRNA downstream 8195 32034823 ~ 32053854 (-) False LOC110508983
XM_036966567.1 mRNA downstream 10128 32034823 ~ 32051921 (-) False LOC110508983
XM_036966563.1 mRNA downstream 10135 32034823 ~ 32051914 (-) False LOC110508983
XM_036966208.1 mRNA upstream 26780 32191802 ~ 32199230 (-) False LOC110508994
XM_021589926.2 mRNA upstream 26780 32191802 ~ 32199385 (-) False LOC110508994
XM_021589927.2 mRNA upstream 26780 32191802 ~ 32199386 (-) False LOC110508994
XM_036966209.1 mRNA upstream 26780 32191802 ~ 32201824 (-) True LOC110508994
XR_002471384.2 mRNA upstream 63403 32228425 ~ 32230258 (-) False LOC110508997
TU2434105 other downstream 33491 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other downstream 33491 32023058 ~ 32028558 (-) False LOC110508982
TU2433711 other downstream 178909 31882715 ~ 31883140 (-) True G2128568
TU2433533 other downstream 324557 31711608 ~ 31737492 (-) True LOC110508968
TU2433312 other downstream 738685 31319341 ~ 31323364 (-) False G2128242
TU2434271 other upstream 63384 32228406 ~ 32230214 (-) True LOC110508997
TU2435888 other upstream 1233525 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1875184 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1876416 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1876547 34041569 ~ 34042565 (-) False LOC110509052

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031862 True 5107 mRNA 0.38 3 NC_007113.7 7419986 ~ 7431590 (-)
grasscarp (Ctenopharyngodon idella) TU27514 True 2376 TUCP 0.38 3 CI01000004 467843 ~ 471846 (+)