RNA id: TU2434272


Basic Information

Item Value
RNA id TU2434272
length 1804
lncRNA type sense_over
GC content 0.41
exon number 4
gene id LOC110508996
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32240882 ~ 32243585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACTGGACTCTCTGAACAGAATCTTTCCACATCACAACTCAGTCGGTGCTCTGTCGTCTGAAACAACATCATGCTTTTCCTATTACTTTGTGTTGGATGTGTTGCTTTGTCTGCAGGGCAATCCTTTGCTTCAACACCTACAATGGGACCATGGGCTACCACGACACAGGTGACAACACCTCCAACTCTTACTACCCCTTATGTGGACCCACCTTTTGGTACTAAACCCCTGGAAAGTGGATTTGCAATTCTTCAGGTCGCTGTCCAATCTTATCAGGAGCTAAATGAGACTACAGCTGATCCAGTCTTGAGTCAGATCTACGACATCGTTCGGGCGAAGCGACCTGATCTGAAATTTCGACTGACCGTGAAAACTGTCCAGAAAGTTTGATGGATTATGATCCAAGGCATAGCAGATTGAAGTTCTAGTGGTACATCATGTTCTGCAGATGTGAACTATTGTACTGTATTTTCAATGATTTTATGCTGTTTATCAGTCATTATATTCATGTTAATAATATATTTGAATGTATAATTTCATTGACTTATTGACTTGCTGCGCATTCCAATCACCATCTGGGGGAGGAGCTGTAATTCAAGAGTTATGTCACAACTTTTCCCACTTTCATAGAATCTTGTCATCTGCGTCCAGTGTTTTCTGATGGATTTGATGTTGGACTGAATAGTCCTAACTACTGTAATCTTTTCTTTGGCTATAAACATGTTACAAATGCTGCAACTGTTCTCACACTCATGTTAATTCAACGgatctttttttaaatttcaaaCATAAGGTGACTTCCCTGAAAAGAACAGTCCACCCcaacccccaaaaaatgtatatattatttttttcattCATAAAAAAAATCATGACAATGTGTACAAACTAAGCTAAACCTTTAACTACTAGCCACATTTATGCAAGCAAGGGGTTTCCCTCCAAAGCTAAATCAATTGGTGTATTAATTTACAACAGAAACATGAAAATTGTTAAGCGTTTTTAATTGAGTGTTCACAAATATCAACGTAAAAAATGTACCATGTACATTTTAGAACGACGTTTGAAACCAAGTCACGTAGGCCTGTTATTATGAACATACAGAACCAGAGGCTCCAGAGAGTGTAgcctacatttattttattttacctgagtagccagcagcataccatcctgcatcccactgaccaggaccaaccctgcttagcttcagaagcaagccagcagtggtatgcagggtggtatgctgctggcaaatgGATATGTATGCAACAACAGTTTAACATTctccttctgctaccatttctatCAAGCCGTCTACGCAGACAGTTTGACGCATACGTTCGATAAATCCAAGGTATAAACCAAGccgaacgcactgcaactgcctctgaaacgcaatgctgcaaggcaaacgcagcgtttcgttggaaatgaatgtaattctggtgtaccaaaatgcaaaaacactgtcggtgtgatcgaAGCATTTAGTCGCATGTCCGGGACACGCATGTCCGGGACACGCATGGTATACATCCTTCAACGAAATGTTTACTTTTAGTAGGGATATACTCTTACCTACAATCCGGTCTTTGAGGCTGCAATAGTTGGCTATCCAAGACTCTGAGATGGCATCACCCGGGTAAAGAACAGAAGTGTCACCTGAGAACATGCAGGAGGCCACAGTGTGTGGAAGGGAAGAATAATTGATGGATTGCTTTGCGATGGAGACAAAATGACCTAAATCCTCACAATATGTCACTTTGACCAAATGTGCTcctggctgaataattttgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434161 lncRNA downstream 53399 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA downstream 53399 32157032 ~ 32187483 (-) True asip2b
TU2434132 lncRNA downstream 211657 32023058 ~ 32029225 (-) False LOC110508982
TU2434140 lncRNA downstream 211657 32023058 ~ 32029225 (-) True LOC110508982
TU2434137 lncRNA downstream 212244 32023058 ~ 32028638 (-) False LOC110508982
TU2434304 lncRNA upstream 24183 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 53669 32297193 ~ 32297394 (-) True G2129038
TU2434324 lncRNA upstream 61775 32305299 ~ 32305562 (-) True G2129041
TU2434327 lncRNA upstream 65886 32309410 ~ 32309627 (-) True G2129044
TU2434300 lncRNA upstream 67352 32310876 ~ 32311370 (-) True G2129017
XR_002471384.2 mRNA downstream 10624 32228425 ~ 32230258 (-) False LOC110508997
XM_036966209.1 mRNA downstream 39058 32191802 ~ 32201824 (-) True LOC110508994
XM_021589927.2 mRNA downstream 41496 32191802 ~ 32199386 (-) False LOC110508994
XM_021589926.2 mRNA downstream 41497 32191802 ~ 32199385 (-) False LOC110508994
XM_036966208.1 mRNA downstream 41652 32191802 ~ 32199230 (-) False LOC110508994
XM_036966476.1 mRNA upstream 592 32244116 ~ 32263430 (-) False ccdc39
XM_036966477.1 mRNA upstream 592 32244116 ~ 32263430 (-) True ccdc39
NM_001160591.1 mRNA upstream 20119 32263643 ~ 32267018 (-) True dcnl1
XM_021589932.2 mRNA upstream 37379 32280903 ~ 32292193 (-) True LOC110509000
XM_021589933.2 mRNA upstream 68547 32312071 ~ 32332419 (-) False LOC110509001
TU2434271 other downstream 10668 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 75860 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 75860 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 75860 32157032 ~ 32165022 (-) False asip2b
TU2434105 other downstream 212324 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 1155023 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1796682 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1797914 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1798045 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1801166 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile