RNA id: XM_036966476.1


Basic Information

Item Value
RNA id XM_036966476.1
length 3687
RNA type mRNA
GC content 0.50
exon number 20
gene id ccdc39
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32244116 ~ 32263430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACgtgattattttatttaactaggcaagtcagttaagaacaaattcttatttacaatgatggcctacaatGTTAAGTATGTAAGTTGGATAGAAAATAGGCAGGATGGTTTATTGTAAAATAGTAATTCAATTCTAACCTTTTGGTGTGATTCACAAAGTTTTTAGTGGATAAACTGAGTACAGTGACTCCGGTAGCATGCATTGCCAAGTGGTGGTAGTTGTGTGGCCCTCTTGTGACGCGTGCGATTTTATTTTACAACCGGATGATGTGGTAACTAACCACCTGACACGGTTGCTAGGGGCCAGCATTGACAACACGGCGGTTTTGTGTCATGTTATGACCCTTtacaagttgtcaaaaatagaacAAAGTAGCAATTTATTACTTATTGTAAATAATTAGTTGGCATATTGGGCTGGCTTGATATTCAGTTCTAAAACTTGGAATTTAGTCATACAGAAAAAATGTCGAACATACTTTTATCCGAGGTAGGCTGGGACGAGGGCTTTGCCATCCCAGTTGCCAATGCAGAAAATAAAGGTTTGGAAGATGAGCTTCAAATGAAACAAAATCAGAAGTTACAACTGGAGAACAAACTTGGTGGATACAAGGATAGAATACAAGCCATGGCTGAACACCTGACAAATGTTAGGCAGGAGTTATCTCAAACTCAGGCTCTGTGCAAAGCcagggagaaagagactgagtcggagatgcatttcaaggccctggcagagagagaggtgggccgCCTGCGTCAGGAGATTGCACAGCTGGACAACGAGCTTGGAGCTCTGAGGGAGAAGAAGAATGCACAAGAGAACAACATCTTCAAAGCCACCCAGAAGCTGGAAGAGCTGAAAAGCCAGCTGAATTGGGACCAGCAGACCCTGGATGCCTGGCTTGAGGAGTCGGCACACAAGGACGAGGACACCATGGCCATCATCAAGTACGCCCAGCAGGACGAGAGCAGGATACGGGAGCTCACCTTGTTGATAGAGAAGATGACGCTTGAGGCCAACCAAAAGCACAAGGCACTGGACAACGAACTGACTGAAACCATATCAGCACAGATTGGTCTGGATAAGACCGCAGAAAACTTCCGCCAGGCTCACCTAGAGAGACAGGAGCTGATCCACCAGTGGGAGAACACCATCGAGCAGATGAAGAAAAGAGATAGCGAGATGCAGCAGTGTTCAATGCTCCTCACCCAAGTCAACCAGGACatcagagagaggaatggagtgaTCAAGGAGAAGAAGACCTTcctggagagcgagacagagaacaACAAGGAGTACGAGAAGAAGATAGCCATGGCCGACCGGCAGGCGGCCAAGCTGAGACGGGAGTTCCAGGAGCAGGAGAGTAACCGCACCAGACTACAGGATGAGTTGGAGAGTCTGAAAGGGACAGTGGACAGAGCAGCTACTGATGTCGAGTCCATGAGGTCCCAGCTAGCCAACATGAAAAAGGACATCCAGGACAAAAACAACAAGATAAAGGGGGCCAAGCTTCATAACACAGCCCTGGAGGAGAAGCTGAAGACAGTGACTGAGACGACCCTCAGCGTGGAGGAGAGGGCCGCTCAGATGGAGCAAGTACTGAAGGAAGAGGAGCAAACTATCAAAGACATGGACGCCCAGCTGCACCGCCACCGCGAGGTGCTGTTCCGTGAGAGCCAGGAGGTACAGGCCCTGAGGTTGAAGGAGAAAGACTCCATGGCCGTGCTCTCTGGGAGCCGGGTGGCTCTCTCCAACCTGGACAGCCGCCTCAGTAAACTGGACCAGAACTCCCTCAAGCAGCAGGAGATCATCTACAACCAGGACTTCCAGATCCAGCTGCTGGAGAGGAAGATGTTGCGTCTGCGTGGCGAGGTGAACACGGAGGAGAAGCAGGTCCTAGAGAAGAAGGCCCAAAAGCTGGCCCACAGgctggaagagaagaagaggactgCCACCATGCTCACCACCCAACTCAAGAAGCTCCAGGATGATATTCGCTGTGTGAGGAAAGAGGCGGAGAAGACAGGAGCTGAGAAGAGTGACCTAACCACCAAGATCGAGGAGCTGCACCTGTTCAACCACATCTCCGACAAGGAACTGAAGAAGCTCCGGCTCAAGAAGCAGGACACCATGGTGGAGGACAACATCCTGAAGCTGGAGATCAAGCGTCTGCGTGACCTGCTGTACAACAAGGCGGACAGCGTGCTCTCGCTGGAGAAGCGGCGGCTGCAGCTGCAGACGGCCATGAGGGAACGGGAGGAGGAGATTAAAGCTCACCGGGAGATGCTCAACAAGCAGGTCAAGATCACTGACCAGGAGCGCCAAGGACTCAGTGCTGAGGTGCATGAGAGACTGTCCAAGGTCGACAAGATGAGGAAACGCTATGAGATTATGACTGTCTCAATGGCTGCTCCCGAGGGAGAAGAGGAAAAATCACAGGCTTATTATGTGATCAAGGCTGCCCAAGAGAAAGAGGAGCTCCAACGCGAGGGAGACGATTTGGACGCCAAGATCCGCAAGATGGAGAAGGAGATCCGAGCGCTGGAGAACACTCTCCACGTCGTCAACAGCCGCAACACAACCTATCGCAAATCCTTCAACAAAGTGACTGAGTCCAGTGAGGAGTATCAGGAGAAACTGAAGCTGGATGAGCAGAAGAGAGCTGCTGAGGAGAAGTACAAGTACAAGAGGAGGCAGATCCGAGAACTGCAGGAGGACATTCAGGGCATGAACAATACACTCGACAACCTGCTTCAAGAGGAGGCCATTCAGAATGTGAGGACTGAAGAGACCCAGTCACATATCATGTCTCTGAACAGAGAACTGGTTTCCCAGCAGGAGAAACTCCACAGGGTCACTAAGCAGTGCTCCAAACTGACCAAAGAGATCCGGTCGGCCAAGAAGGCCAAGGAGGAGACGTTTGAGGAGAGGGACATTGAGCTGAGGGAGCTGAAGGACTTCAATAAGAATATCAACAAGATGCTGCTGGTTGCCATGGAGGAACAACCTGACCTCAGATCAGCTCTACACATGTACTTTGTCCAGGCCAACTTGCCCCTGCCGTCTCCTGCCTCCACCCCTTCCAGCCGACAGAGCTCAAAGACTAACTCTGCtcgcagctctgtctctctcagGTCAGCTGGGTCTTCAGCCAGCAGCAGCCCAAGGGAGGCGTCAGTGCAGTCTCCCCCTGTTAAGActctggagctgggtctggggTTGTCCGTTACGTCCCCTCCTCTCAACTCTCCACGGGACTCCCATCCACCCAGCTccaccaccagcagcagcagcggtaGCAAGCGCCAGAGCCCATAGAGAAACCCCACAATAGGACAGCCTCACTTACAGCACCAGAAGGCTAATGTGACTGTAGTGCCATTAGGAAAGAGAATGTGTGTCACTGTTCAATGTGTACAACTGTTTGGtgagttgatttgatttgcatgttgttgttttttttacgaACTGGGACAACTTGGCAGTGATTTGAGAAATACACTTAAATAATATATGATTTACCTTTTCTTTGAAGGCACATGTTTTCCATTTGTCAGCTAACCTTTATAGAATTGTATTGTAAATGTGCAtaaaaaatatgtactttttcTAAATTCATTTTGACTCCTGGCAATGTGTTTCTGGATATATCCCAATAAAATAGATGGTTGCTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434272 lncRNA downstream 592 32240882 ~ 32243524 (-) True LOC110508996
TU2434161 lncRNA downstream 56633 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA downstream 56633 32157032 ~ 32187483 (-) True asip2b
TU2434140 lncRNA downstream 214891 32023058 ~ 32029225 (-) True LOC110508982
TU2434137 lncRNA downstream 215478 32023058 ~ 32028638 (-) False LOC110508982
TU2434304 lncRNA upstream 4277 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 33763 32297193 ~ 32297394 (-) True G2129038
TU2434324 lncRNA upstream 41869 32305299 ~ 32305562 (-) True G2129041
TU2434327 lncRNA upstream 45980 32309410 ~ 32309627 (-) True G2129044
TU2434300 lncRNA upstream 47446 32310876 ~ 32311370 (-) True G2129017
XR_002471383.2 mRNA downstream 531 32241792 ~ 32243585 (-) False LOC110508996
XR_002471384.2 mRNA downstream 13858 32228425 ~ 32230258 (-) False LOC110508997
XM_036966209.1 mRNA downstream 42292 32191802 ~ 32201824 (-) True LOC110508994
XM_021589927.2 mRNA downstream 44730 32191802 ~ 32199386 (-) False LOC110508994
XM_021589926.2 mRNA downstream 44731 32191802 ~ 32199385 (-) False LOC110508994
NM_001160591.1 mRNA upstream 213 32263643 ~ 32267018 (-) True dcnl1
XM_021589932.2 mRNA upstream 17473 32280903 ~ 32292193 (-) True LOC110509000
XM_021589933.2 mRNA upstream 48641 32312071 ~ 32332419 (-) False LOC110509001
XM_036966022.1 mRNA upstream 48641 32312071 ~ 32332419 (-) False LOC110509001
XM_036966023.1 mRNA upstream 48641 32312071 ~ 32332419 (-) False LOC110509001
TU2434271 other downstream 13902 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 79094 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 79094 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 79094 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 215558 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 1135117 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1776776 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1778008 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1778139 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1781260 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile