RNA id: TU2405415


Basic Information

Item Value
RNA id TU2405415
length 290
RNA type TUCP
GC content 0.57
exon number 1
gene id G2103015
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9776619 ~ 9776908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggaggggtttgagcagagcacaatgaaggggtttgagcagagcacaatggaggggtttgagcagagcacagcggaggggtttgagcagagcaccgTGGAGGGATTTGAGCAGAGCACCgtggaggggtttgagcagagcacaggggaggggtttgagcagagcaccttggaggggtttgagcagagcaccatggaggggtttgagcagagcacaatggaggggtttgagcagagcacaatggaggggtttgagcagagcataatggaggggtttgagcagagcacaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2405414 lncRNA downstream 76 9776306 ~ 9776543 (-) True G2103014
TU2405413 lncRNA downstream 6425 9769930 ~ 9770194 (-) True G2103013
TU2405410 lncRNA downstream 10540 9765867 ~ 9766079 (-) True G2103010
TU2405409 lncRNA downstream 10876 9765536 ~ 9765743 (-) True G2103009
TU2405408 lncRNA downstream 13360 9762957 ~ 9763259 (-) True G2103008
TU2405417 lncRNA upstream 4895 9781803 ~ 9782033 (-) True G2103017
TU2405422 lncRNA upstream 16246 9793154 ~ 9793491 (-) True G2103022
TU2405423 lncRNA upstream 17473 9794381 ~ 9794885 (-) True G2103023
TU2405436 lncRNA upstream 41515 9818423 ~ 9818646 (-) True G2103036
TU2405437 lncRNA upstream 41914 9818822 ~ 9819042 (-) True G2103037
XM_036966211.1 mRNA downstream 101400 9629144 ~ 9675219 (-) False LOC110508471
XM_036966210.1 mRNA downstream 101401 9629144 ~ 9675218 (-) False LOC110508471
XM_036966212.1 mRNA downstream 101401 9629144 ~ 9675218 (-) False LOC110508471
XM_036966213.1 mRNA downstream 101401 9629144 ~ 9675218 (-) False LOC110508471
XM_036966214.1 mRNA downstream 101401 9629144 ~ 9675218 (-) False LOC110508471
LOC110508157 mRNA upstream 120865 9897773 ~ 9937313 (-) True LOC110508157
LOC110508158 mRNA upstream 162065 9938973 ~ 9940505 (-) True LOC110508158
XM_021589014.2 mRNA upstream 227318 10004226 ~ 10007929 (-) False LOC110508476
XM_021589018.2 mRNA upstream 253885 10030793 ~ 10041030 (-) False LOC110508478
XM_021589019.2 mRNA upstream 253885 10030793 ~ 10041031 (-) True LOC110508478
TU2405308 other downstream 207568 9567966 ~ 9569051 (-) True G2102910
TU2405103 other downstream 521453 9231694 ~ 9255166 (-) False G2102731
TU2405120 other downstream 596469 9178334 ~ 9180150 (-) True LOC110508459
TU2404356 other downstream 798520 8976852 ~ 8978099 (-) True LOC110508274
TU2403860 other downstream 1294206 8481732 ~ 8482413 (-) True LOC118936616
TU2405361 other upstream 19586 9796494 ~ 9811858 (-) True LOC110508473
TU2405551 other upstream 227318 10004226 ~ 10007903 (-) True LOC110508476
TU2405613 other upstream 336520 10113428 ~ 10115397 (-) True G2103203
TU2405667 other upstream 429155 10206063 ~ 10206676 (-) True G2103257
TU2406439 other upstream 931104 10708012 ~ 10708499 (-) True G2103920

Expression Profile