RNA id: TU2435888


Basic Information

Item Value
RNA id TU2435888
length 538
RNA type TUCP
GC content 0.42
exon number 1
gene id G2130393
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33398547 ~ 33399084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaaataaatgtattcaTGGAGCTCTCCTTGCGAGTTGAGATGTTAATTTAGAGTTAGCTTGACAGCAGAGGCTCAAGTCCGCTGTAGTCAGGCAGTGGGACTTCATTGGAATGACTGGTTCAGGAAATGTGTCAGAATTCAAGTCAAGGTTTTGACTCAGAGGAACATCCCTTTCATATCAGGCAGGTGTGTGTACTTTACCCCTCTTTACACTCAGATCCAGGTACAAAGAATACGATTTCTACCTCCTCACATCATCAGAGCTATCATGCTGCAATTCCACCTAAGACTTACACCACACCAGTGTGTTGCCAGTGTTTTATGTTAATGTCAGCTCCAGTGTTGTGTTTCCAGTGGTTTATGTTAATGTCAGCTCCAGTGTTGTGTTTCCAGTGTTTTATGTTAATGTCAGCTCCAGTGTTGTGGTTTATGTTAATGTCAGCTCCAGTGTTGTGTTTCCAGTGGTTTATGTTAATGTCAGCTCCAGTGTTGTGTTTCCAGTGGTTTATGTTAATGTCAgctccagtgttgtgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435882 lncRNA downstream 8292 33390032 ~ 33390255 (-) True G2130387
TU2435880 lncRNA downstream 10188 33388032 ~ 33388359 (-) True G2130385
TU2435879 lncRNA downstream 10796 33387528 ~ 33387751 (-) True G2130384
TU2435877 lncRNA downstream 14470 33383805 ~ 33384077 (-) True G2130382
TU2435745 lncRNA downstream 123792 33272894 ~ 33274755 (-) True G2130263
TU2435889 lncRNA upstream 651 33399735 ~ 33400010 (-) True G2130394
TU2435893 lncRNA upstream 13884 33412968 ~ 33413363 (-) True G2130398
TU2435899 lncRNA upstream 27334 33426418 ~ 33426855 (-) True G2130404
TU2435904 lncRNA upstream 33671 33432755 ~ 33433053 (-) True G2130409
TU2435833 lncRNA upstream 41318 33440402 ~ 33450543 (-) True LOC110509034
XM_036966871.1 mRNA downstream 17347 33313433 ~ 33381200 (-) True LOC110509030
XM_036966872.1 mRNA downstream 17881 33313433 ~ 33380666 (-) False LOC110509030
XM_036966873.1 mRNA downstream 17882 33313433 ~ 33380665 (-) False LOC110509030
XM_036966874.1 mRNA downstream 17882 33313433 ~ 33380665 (-) False LOC110509030
XM_036966875.1 mRNA downstream 17882 33313433 ~ 33380665 (-) False LOC110509030
XM_036966733.1 mRNA upstream 7589 33406673 ~ 33485169 (-) False LOC110509034
XM_036966732.1 mRNA upstream 7589 33406673 ~ 33514461 (-) False LOC110509034
XM_036966734.1 mRNA upstream 7593 33406677 ~ 33422858 (-) False LOC110509034
XM_021589978.2 mRNA upstream 119620 33518704 ~ 33526697 (-) True LOC110509036
XM_021589979.2 mRNA upstream 155933 33555017 ~ 33562140 (-) True LOC110509037
TU2434271 other downstream 1168333 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1233525 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 1233525 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 1233525 32157032 ~ 32165022 (-) False asip2b
TU2434105 other downstream 1369989 32023058 ~ 32028558 (-) False LOC110508982
TU2436339 other upstream 641122 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 642354 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 642485 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 645606 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 1086785 34485869 ~ 34486176 (-) True G2131621

Expression Profile