RNA id: TU2436903


Basic Information

Item Value
RNA id TU2436903
length 547
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G2131282
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34400956 ~ 34401502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGTTAATGTTGTGTATAACACATGGTAGCATGTTTCATTTATAAATCATGAAATGCAAAATCCCAAGTAAAATCATGAAATGTCATGCAAAATCCCAAGTAAAATCATGACATTTTCCCAATGTGAAGTTCAAGATGTAtaaatcccaaacgttaccatgGATTTCATCGTACGCACAATGTACGATCAAATCTGTGCGTGAGCACATTTTATaaatgagccccccccccccccccccccaccctgatTTCACCATATTGGGCTTCAACCAACTTACTCCAGGCGGATCAAAACCTGCAAAAGACAACACACAGATGAGATGGCAGATACATTCAGATGCCTTACCTTCAATGGGCCTGGGGACAAAGTGTGATGAGGGCTTGGTCTTCTTGACCCTGTTccccttcatgacctggccttcCTTGGTGAGGCCCAGGAACCAGGCCCGACCGGACTCCTGCTGCCGGTACACAGTGGACGAGTAGATCACGTAGTAATTCTCAAACACCGACTCCTTAAACTTGCACTCCGGCGTGAACATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436900 lncRNA downstream 2969 34397717 ~ 34397987 (-) True G2131279
TU2436816 lncRNA downstream 21401 34375912 ~ 34379555 (-) True G2131208
TU2436848 lncRNA downstream 78771 34321901 ~ 34322185 (-) True G2131234
TU2436815 lncRNA downstream 95735 34304728 ~ 34305221 (-) True LOC110509056
TU2436832 lncRNA downstream 116924 34283833 ~ 34284032 (-) True G2131219
TU2436904 lncRNA upstream 2134 34403636 ~ 34404048 (-) True G2131283
TU2436906 lncRNA upstream 3501 34405003 ~ 34405338 (-) True G2131285
TU2436902 lncRNA upstream 4355 34405857 ~ 34409452 (-) True G2131281
TU2436949 lncRNA upstream 81607 34483109 ~ 34483386 (-) True G2131318
TU2437323 lncRNA upstream 82196 34483698 ~ 34483954 (-) True G2131619
XM_021590008.2 mRNA downstream 79366 34304706 ~ 34321590 (-) False LOC110509056
XM_021590021.2 mRNA downstream 100328 34284268 ~ 34300628 (-) True vcam1a
XM_021590015.2 mRNA downstream 131939 34258195 ~ 34269017 (-) False zgc:110366
XM_036966668.1 mRNA upstream 20670 34422172 ~ 34481857 (-) False LOC110509050
XM_036966669.1 mRNA upstream 24105 34425607 ~ 34481859 (-) True LOC110509050
XM_036966882.1 mRNA upstream 170531 34572033 ~ 34604132 (-) False LOC110508232
XM_036966883.1 mRNA upstream 170531 34572033 ~ 34604132 (-) True LOC110508232
XM_036966648.1 mRNA upstream 311765 34713267 ~ 34728197 (-) True LOC110509072
TU2436349 other downstream 332883 34041438 ~ 34068073 (-) True G2130780
TU2436339 other downstream 334291 34040206 ~ 34066665 (-) True G2130771
TU2436347 other downstream 342686 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 358391 34041569 ~ 34042565 (-) False LOC110509052
TU2435888 other downstream 1001872 33398547 ~ 33399084 (-) True G2130393
TU2437325 other upstream 84367 34485869 ~ 34486176 (-) True G2131621
TU2437347 other upstream 115020 34516522 ~ 34518129 (-) False G2131641
TU2437349 other upstream 115020 34516522 ~ 34518129 (-) True G2131641
TU2438804 other upstream 1603987 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 1614560 36016062 ~ 36017832 (-) True lyrm4

Expression Profile