RNA id: TU2439124


Basic Information

Item Value
RNA id TU2439124
length 217
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2133134
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36609132 ~ 36609348 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagggtagcctagtggtcagagcgttggactagtaactggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagtaaaataaaggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2439105 lncRNA downstream 30989 36575378 ~ 36578143 (-) True G2133115
TU2439022 lncRNA downstream 170231 36438508 ~ 36438901 (-) True G2133040
TU2439040 lncRNA downstream 171321 36437593 ~ 36437811 (-) True G2133058
TU2439039 lncRNA downstream 171688 36437245 ~ 36437444 (-) True G2133057
TU2439012 lncRNA downstream 204391 36400409 ~ 36404741 (-) True faim2a
TU2439125 lncRNA upstream 2228 36611576 ~ 36611832 (-) True G2133135
TU2439134 lncRNA upstream 13836 36623184 ~ 36623559 (-) True G2133144
TU2439140 lncRNA upstream 20229 36629577 ~ 36629803 (-) True G2133150
TU2439155 lncRNA upstream 45821 36655169 ~ 36655396 (-) True G2133165
TU2439184 lncRNA upstream 75879 36685227 ~ 36687547 (-) True G2133192
XR_005040180.1 mRNA downstream 51600 36526794 ~ 36557532 (-) False LOC110509111
XM_036966569.1 mRNA upstream 189097 36798445 ~ 36958711 (-) False LOC110509116
XM_036966342.1 mRNA upstream 391175 37000523 ~ 37001147 (-) True LOC118944834
XM_036965879.1 mRNA upstream 705263 37314611 ~ 37323106 (-) False impa1
XM_036965878.1 mRNA upstream 705263 37314611 ~ 37333488 (-) False impa1
XM_036965880.1 mRNA upstream 705263 37314611 ~ 37333488 (-) False impa1
TU2439020 other downstream 51679 36556500 ~ 36557453 (-) True LOC110509111
TU2438987 other downstream 345802 36263002 ~ 36263330 (-) True G2133007
TU2438933 other downstream 359357 36235515 ~ 36249775 (-) False G2132966
TU2438943 other downstream 359357 36238230 ~ 36249775 (-) True G2132966
TU2438948 other downstream 383753 36224213 ~ 36225379 (-) True G2132971
TU2440638 other upstream 1157370 37766718 ~ 37939843 (-) True LOC110509127
TU2440825 other upstream 1518781 38128129 ~ 38130407 (-) True G2134625
TU2441345 other upstream 1910223 38519571 ~ 38526920 (-) True G2135034
TU2442402 other upstream 2396113 39005461 ~ 39006050 (-) True G2135837
TU2442821 other upstream 3194447 39803795 ~ 39829179 (-) True LOC110509145

Expression Profile