RNA id: TU2442983



Basic Information


Item Value
RNA id TU2442983
length 252
lncRNA type intronic
GC content 0.55
exon number 1
gene id G2136234
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 40043678 ~ 40043929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tccgtaatcACTCCAGTCATCTGGTCTGTGCACTGCTccgaggacgcggctagggatgccttcTGGGCTGGCAGGATTGTGAGGGTTAGCACGCTTAAATGTTTAACTCACGTCGGCCTTGGAGAACGAGAGCCCTTCAGTCCTTGGTAGCGGTCCacgttggtggcactgtgttatcttcaaagcgggcgaagaagatGTTTAGCTTGTCAGggagcaagacgtcagtgtccTGGACGTGGCTGGTTtgcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2442982 lncRNA downstream 296 40043143 ~ 40043382 (-) True G2136233
TU2442981 lncRNA downstream 820 40042598 ~ 40042858 (-) True G2136232
TU2442972 lncRNA downstream 27565 40015806 ~ 40016113 (-) True G2136223
TU2442971 lncRNA downstream 28695 40014763 ~ 40014983 (-) True G2136222
TU2442968 lncRNA downstream 38624 40004627 ~ 40005054 (-) True G2136219
TU2442984 lncRNA upstream 1067 40044996 ~ 40045211 (-) True G2136235
TU2442985 lncRNA upstream 1873 40045802 ~ 40046009 (-) True G2136236
TU2442986 lncRNA upstream 2477 40046406 ~ 40047045 (-) True G2136237
TU2442988 lncRNA upstream 3957 40047886 ~ 40048086 (-) True G2136239
TU2442990 lncRNA upstream 5347 40049276 ~ 40049533 (-) True G2136241
XM_036966460.1 mRNA downstream 173742 39843311 ~ 39869936 (-) True ndufv2
XM_036966458.1 mRNA downstream 214471 39778552 ~ 39829207 (-) False LOC110509145
XM_036966457.1 mRNA downstream 214472 39778552 ~ 39829206 (-) False LOC110509145
XM_036966923.1 mRNA upstream 71472 40115401 ~ 40127201 (-) True LOC110509140
XM_036966347.1 mRNA upstream 124482 40168411 ~ 40317511 (-) False LOC110508253
XM_036966056.1 mRNA upstream 408387 40452316 ~ 40563499 (-) False LOC110508251
XM_036966055.1 mRNA upstream 408387 40452316 ~ 40587932 (-) True LOC110508251
XR_005040272.1 mRNA upstream 553331 40597260 ~ 40599320 (-) True LOC118944871
TU2442946 other downstream 46632 39990563 ~ 39997046 (-) True LOC110508256
TU2442908 other downstream 97844 39943153 ~ 39945834 (-) True G2136189
TU2442821 other downstream 214499 39803795 ~ 39829179 (-) True LOC110509145
TU2442402 other downstream 1037628 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1516758 38519571 ~ 38526920 (-) True G2135034
TU2442992 other upstream 7710 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 371374 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 428159 40472088 ~ 40475701 (-) False G2137111
TU2444111 other upstream 428326 40472255 ~ 40475701 (-) False G2137111
TU2444115 other upstream 428326 40472255 ~ 40475701 (-) False G2137111

Expression Profile