RNA id: XR_005040371.1


Basic Information

Item Value
RNA id XR_005040371.1
length 6613
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC110509425
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32115629 ~ 32150579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCGTCCAGAAGAGATGACAATCCGCAAGTTTCATTCCACCAATAATGCTACAGTCTTCTTTTGGACTTGTGAATATTCTGTCGAGAGTCGAGACCTTAATGGCACCGAAGAACCCCCCCCCAACGAACAGTGTCTCGCACTGTAAAGAGATGCCCTCCTCGTAATTAGATTAATTTGCCATTAATGTCCATTTCGGGAGTTATAACTGAAGCTTGCAGTTCGACTTCAACAATGGACTCAGACACAAGCAGCTGTACAGAGAGCCAGTCCCAGGCAGAATCTGATCAGCAAGTTCTAGCTACATCCatgAGGCCACCAATCAACCTGATAGAGACTGGAGGAAGCCTGAAGGTACAGacgaccacacctcacctggttGGCCTGGGCAGTGGCCGGCTCAGTGTTGCCATTACACTTATGCCCCTAAATGAAGGTGTGACCCGAATTGGCCGAGAGGATGCGTCCGTACCTCAAGACATCACTATTGAGGGCTTGGGTATAGAGGCAGAGCATTGTCGTATTATAAATAGAGGAGGAGTCATCACCCTTCACCCTTCCGGAAACCTGTGCTCACTTGATGGAGTCCATGTCTCAAAGCCAACATTGCTGACACAAGGATTCACACTCTGTCTGGGTAAATCCTACTTCTTCCGCTTTAACCACCCTGAGGAGGCCAGACGTATGAAGAGCATGCAGCCCCAGAAGAGTCCTGTCGCCACTATGGGCTACAGCTCAGACTGTGTAAAGACTGAGCACAGCAATGGCGTCTCAGTGGGTGGCACCATGATGAGAGGCTCCCGATCGAAGGCGGAGCTGCAGGACCTGATGGAGACTCTGCAACGCCGGAAGAGTGCTCTAGAGGCTAGCCTGAGGGCCAGCGCAGAATCTACCCGTACCTACCTCAGCCTGCCCCCTCCCAGCCCCCTGTCCCCCACGCCCCCCAGGAGTGCCGAGCGCCCCCCCTCCTCCAGAGGCCTCCCCTACATGACCAGTAGTAGCATGCCCCCCTCCCCTCGCCAGGGTGAGCGTCCTCTCAGCCCCAAACCGCCATACACCCGCTCACGCCACCAATCACAGGACAGCCTGCTCCTCTCTAGCTCCTCTGACAGGCATTGCCCAAATGTAGCCAGTTCTCTCCTATCCATGTGGAATGGTTCCTCTTCCTATGGGGAGCCTGCACACAGTCCTCCTCAGGGCCACAGTGGGGCGGCCAGCATGCCCTCCAGCCCTCGCCTAGGTCGCAGGTTCTATGCCCAGGGCCGGAACGGGGACAATGGTATGGACCCTGCGCCACGTCAGAGGAAGTACTCTACAGGGTCACTCAACGGCCTGGGCTCTACCCACAGCCGCTCTCTACCCCGCCTCCACCGGTCGGCAGACTCCACAGCCCTGTCTCTGCCCCCACGCCGCTCCATGGGCTCCCACAGAGGGGAGAAGGGTTCTGTGTCCCTGTCCTCCAAAACGAGGCGCAGCCTGTCTCCTCTGGAGCGGCCGCCAGACGTAACAGTGCTAGCAACAGCCAGCGTACCGGGTACTCCCCGCAGGGCCAGCCTGGCCTCTCTGGCCTCGCTGGGCTGTGAACTGGAGCATGGGGGCCTGCGGGGCTCCTCACCCTGCCTGGACCTGGGCTTGGGGGAGAGGAGGCAGTCCTTTGGGAAGGGTGGGCTGGGGCTGAGATCAAGAAGAGGCAGCATCAGCTCTCTGAATGGGAAGGAGGAGCTTACAGACTACCACAAGCACCAGAGAGACGAGAGGCTCAGAGAACAGGAGGTGCAGAGACTGGAGCACCAGCGGCTGGAGACCATCCTGAGCCTGTGTACTGAGCTGGTCCAGGACCAGGGCGGCTCGGCCATCTCCGACCTGCAGAAGATCAACAAGGAGCTGGAGAAGCTGCAGGAGTCTGATGATGAGTCAGTGTTCTCCGACTACCCCGGCAGCGTCAGTGGCACCGCCCCGGAGAACGGCTTTGGCCCCAAAGCCCGGGAGTACCAGCTGGCTGAGGTGCGGCAGGTCCGCCAGCGCCACCACAGCGGGCACAGAGAAGCAAGGGATGCCAGGGCCCAGTCACCTGCTGTCAGCCTGCGTAGCATTgtcccctcaccctcccctcaccACAGAGCCAGGCAGCAGGCTACGGAGGACGTGCATCTGAAACAGGAAGTAACACGTATCGAGGAAGAGAGGATCCAGGTGCTGAACAACATAGAAGAGTTGGAGCAGAAGATCAAAGACCTGGACAACCAGATGGAGGAATCCATCAGAGAGatGGAGGTGGAGCGGGCTCTGCTGGAGGGAGAGCAGGACTCTGAGATGGCCCTGCTACATAGGGAGAAGGAGGTACTGGACCAACTCAATGAGAAGATTGGCAGCATTGACAAGACTGTCCTCACAGACAAGTCCCAGGATGTTGAGGTGCTGGAGGCGGAGCTGGAGTTCCAGCAGCTGGAAAGAGCGAGTGGTCAGGACAAGGGCAAGGAGGGTCAGCAACTACTCAGAGAGATAGCAGATTACCAGCGTAGTACTGTCACACGCAAGGAGAGACTCCTGACCCTGAAGAAGCAGTCTACACAGATTACTCAGCAGTCTCAGCGAGAGAAGGACAGCTTCCTAAAAGAGAAGAACAACCTGCTCCTGATGGTTCAGAGGGAGAGGGAGAACCTGGCTTCTCTGGAGAGGAAGTATGCTGAACTGACTGGAGGGCAGGCCTTCCCTAGCAACCCTGTTGCCATGAAGGAGCACTTCCGCTTtctagaggagaggaggcggGGCAATAAGGAGAACTCCTCCCACCTCAGTGACACTCTGCCACGTAAGAGGAGCCAGCAGGCCCTCAGTCACTACAGCAGCTCTACCCTGGGCCGCAGCCTGTCCCCTAAGTCCCACCTGCCTCTTTCCCAGAGCTCCAGCTGTGGTAGTATCATCCCCCGgggcctctctatctctcccagaGTTCTGGAAACACGACACCTGCTCAAGGCAGGCCATAGCCACCTGTACATGAGTGAGAACAGACAGAGACTGGTTGACCTGTGTAGCAGGACTGTGTCTGAGTCCAATGTCTTCCTGGACCCCTTCCACTACGCAGACAATGGCCATGGCTTTGACACGCGCAGTATGGACAGCTCTGACAGCATGGAGACCAGCATCTCTGCCTGCTCCCCAGACAACATCTCCAGTGCCAGCACATCCAACGTAGGAAAGATTAAGGAGATGGAACGTTTGTTACGAGAAGCCCAGGCTGACAAGCATCGACTCCTTGAGCACAAGGAGCGTGAGATGGAGGTGCGCAGGCAGGCCCTggaggaggagcggaggaggagggaggacctGGAGAAGAGACTGCAAGAGGAGACCAGCAGGAGGCAGAAAATGATCGAGAGGGAGGTGAAGTTACGCGAGAAACAGAGGGCACAGGCCCGGCCGCTGACACGCTACCTCCCTCAGAGGAAGGATGACTTTGACCTCCATGGTCACATCGAGGCAGCTGGACACAACCCAGACAACTGCTACCACCTGGCCATCACAAATAAAACCTGCAGAGGGTTCCTGGTCAAGATGGGTGGTAAGATCAAGACCTGGAAAAAACGCTGGTTTGTCTTCGACCGGAACCGCAAGACCCTGGCCTACTACGCAGACAAACATGAGGTCAAGATGAAAGGGGTCATATACTTCCAAGCTATAGAAGAGGTTTACTATGACCATTTAAAGAATGCACACAAGagCCCCAACCCATGTCTGACGTTTAGTGTGAAGACCCATGACAGGGTGTACTACATGGTGTCTCCCTCCCCCGAGGCTATGCGCATCTGGATGGACGTCATCGTTACAGGGGCGGAGGGATACATGCAATTCATGGTCTAAACCAGTGGCGGCTGGTGATTGGCTGAATGCCCGGGGCGCGAGGTGGTTGGAGTTGTCAACAAAGCAGCATGACATATGATGCCAAGTTTTCGAGCTACTGGTAGTTTCTTTGAGAAGATATATAAAGCGATCTGTGCATTTGAACAACAGCACAAATGACCACTGCTGCACAAACTGCCACTGTTTTGAACAGATTAGATTATACTATTTAGAAGCAGGTCACGAACGAACAAGAACGTAACACGCATGCAGCTGCAGTAAGTGAAAacacattatctaactggggTAATATAGCTAATATACTGTCACAAAGCATGATGCGCTAGCCAGTTCATTCTGAATATTTTCCATATTTCCCGAGTTAGATATTAGTTTAGAAAGACTTGAAATTGGCATGGGAGCTAACTACCTAGCAAGTTACCAGATAGCTATAACTAGCTAGCTGCTTGTCAAAGGTAGATAACtggttaatttgacaaaaattACTAAACTATTTCTCAATGTTTATAAAAATGACTGTATCTGGCTTAATGAATTTGATCATGCTGTTTCAGTTCACACTACATGTCGCCCTGTCACCTACAAGAGAACCAAATGAACAACTTGGGGGGAAACAATACAATTGGCCAGCCAGATCCCCAATGAGAAAGTTATAGATAGTGTATCCCTCTGTCTTTCAACACTTGTTTGATGTAGATGTCAGGTCCCAGGCTCCAATGACTGTTAGGGttatttatttacaagttaattaCAATTAGATTGTTGCTTTAGCGCCATCTGTACCTGATAGAGCACACATCTGTACCTGATCTGGCGCGAGAGACTCATTGGGAGGGAGACGAGAACAGACCCAGAAGTTCTGATCGAGCACGCATTTGAACGCCCCAGGACAGTCCATTAACTTTGTACTGTTATTATAATTTATGCTAAGAAATCCTGCGATTTCATTGGGGCAGTTCCCCCTCATAGCAAAACAATATAAGCAATGTTTGCATGGCATATGCACCTGCGAGGGACAGAGTAGTAAGTAACTGAACAGCTGGACACATTTACTGCACTTTTATGAGCATTTAAAACATAATTCAtgaattatataatatatattgtatatattttttatacaaaTATTTTCTGTTGACCAATCATAATTGGGGCACCGCCCCTAACGCCCTAATGGGCGGGCCGCTACTGGTCTAAACAACCCCACATCCTGACCACAGACTCTCAGATGACTAACAAACAGGGAATATACTCTCCTCCAGGCCCTAAAAGACTAAACAAGTTGACTGGTCAGGTTTGAGAACCTCTGTGACCCTTCTGCTTTTTAGCTCTGTAACCACTTTTATGTCCGTCTTACTTCAGTGAGCCcagctccctcctcctcttccggATTCTGCTGATGTAATGGTCATCTGATACTTCGCAGTCTAGCAGGGAAGGACTTCCTCTGGAGGAGTGGGTGCCCAGTGCCGCTTGTTCATTCAGAAAGGACTTACTCAGAAGATTCTGATACTTATCGCTTTATGTTTGGAGAGGAGCCTTTTGGCACCTTCATGATATTTCAGGACTGTTAATGACCCAGAGTCTATGTCTGAGGTGTATTATGTAGTCTGATAGGCTCACAGTGTACTAGAGATTACTGCCCATTCAGGACAAGATACTTCTCTTCCATTGTATAATATCATGCTGCCAGTGGGCTGGGTGCAGCTCCCTACCCGATCAATGGGCTCATTCATTTCTGAAAGTTTGAGAAgcgttgcgtcgtgcctaagaacagcccttagccgtggtatattggccatatttcACAAACCCCGAGGagcttattgctgttataaactggTTACAAACGTAATTAGAGCAGAACAATTCaacgttttgtcatacccgtggtatacggtctgatataccatggctttcagccaatcagaattcagggctcaaaccacccagtttataatttgaGTTATTACACAGTCGCTATAAAACCTGTGCAGTACTTGGATATACTTACTACTTTTAAAATTACTTTTTGGGTCACAAATAATGGCACATTAATTTATATTAGTTtaattttctttttgttttttaaCAAATATATATTAATATTTGTCAGTGGTATGTGCATGTTGAACAAACAAATAAGCTATTTGTGTGAAACCAAAGAGCAATGCAATCTGCAGTATTCTAGGGAGATTATATGAAGTCATGGAAAAAAGAAAATGGGATTCTACTTATTTCACCCAGGTATCTTAGCTGATATATTTGTAATTATGACGATGTTATGATAAGTGCTGATAATTGTAAGATGTAATGATACTGAAATGGCGCCCTCATTCACCGTGAAGTCACAGGTAGAACGTAGTAGCAAGGTCCCTGACTGTCAACGAGGTGACTGCGGGAGTGCACACGAGACCAATTAACTTCTCTGACAGTGTTGCAGAGGTGACAGCAGGTTAGCTCACAGGGAATCTTTCACAGCGTTATGAAGAGGTGACTGACAAGCTCTCTGTGACCAGTTGTCTTTTAAAGGAGGATCCCCTATGTGCTCAGTCTGTGTGACTACACAATACAGGCACACGTTTCAGGTATTTTCCATGTATAAGTTACCAAGGAAAAAACTCAACATAACTGCAACACTTTTATGAtgcattttaaatatatattttgcattTTTATATGAACAGTGTTATTGTTAATCCTGcatgttttttaaacaaatgTAAGAATAAATCATATATGTTTACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486770 lncRNA upstream 54728 32060579 ~ 32060901 (+) True G2175678
TU2486769 lncRNA upstream 55116 32060147 ~ 32060513 (+) True G2175677
TU2486759 lncRNA upstream 68701 32045193 ~ 32046928 (+) True G2175667
TU2486436 lncRNA upstream 80695 32034705 ~ 32034934 (+) True G2175411
TU2486421 lncRNA upstream 94206 32006147 ~ 32021423 (+) True LOC110510053
TU2486838 lncRNA downstream 44230 32194809 ~ 32195151 (+) True G2175733
TU2486839 lncRNA downstream 48531 32199110 ~ 32199434 (+) True G2175734
TU2486841 lncRNA downstream 54019 32204598 ~ 32205434 (+) True G2175735
TU2486866 lncRNA downstream 101530 32252109 ~ 32256389 (+) True LOC110510064
TU2486876 lncRNA downstream 106723 32257302 ~ 32258787 (+) True G2175765
XM_036967600.1 mRNA upstream 22148 32080999 ~ 32093481 (+) True LOC110510056
XM_036967601.1 mRNA upstream 23467 32079876 ~ 32092162 (+) False LOC110510056
XM_036967598.1 mRNA upstream 24218 32068554 ~ 32091411 (+) False LOC110510056
XM_036967599.1 mRNA upstream 24218 32068557 ~ 32091411 (+) False LOC110510056
XM_036967891.1 mRNA upstream 94166 32003563 ~ 32021463 (+) False LOC110510053
XM_036967701.1 mRNA downstream 16722 32167301 ~ 32177009 (+) False LOC110510057
XM_021591343.2 mRNA downstream 16730 32167309 ~ 32177009 (+) False LOC110510057
XM_036967700.1 mRNA downstream 16734 32167313 ~ 32177009 (+) False LOC110510057
XM_036967699.1 mRNA downstream 16863 32167442 ~ 32177009 (+) True LOC110510057
XM_021591345.2 mRNA downstream 28295 32178874 ~ 32185850 (+) True LOC110510058
TU2486438 other upstream 77893 32037047 ~ 32037736 (+) True G2175413
TU2486351 other upstream 214393 31900981 ~ 31901236 (+) True LOC110509422
TU2486199 other upstream 504160 31610544 ~ 31611469 (+) True G2175233
TU2485681 other upstream 797252 31317837 ~ 31318377 (+) True G2174785
TU2484723 other upstream 1291485 30822614 ~ 30824144 (+) True LOC110510022
TU2487963 other downstream 1072238 33222817 ~ 33235535 (+) False cxxc5a
TU2487972 other downstream 1072238 33222817 ~ 33235535 (+) True cxxc5a
TU2488718 other downstream 1980432 34131011 ~ 34135399 (+) True LOC110510125
TU2488771 other downstream 2081077 34231656 ~ 34232183 (+) False LOC110510132
TU2488844 other downstream 2209045 34359624 ~ 34460769 (+) True G2177424

Expression Profile