RNA id: TU2664507


Basic Information

Item Value
RNA id TU2664507
length 1585
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G2329997
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 41758587 ~ 41764759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCGGCGTCgggcggtagggccggacctaccgggaagtcatcgaattAACTTTGTCGGACAGTCGGTTTCcgtttaataaaataaacaagttttggaccgtttttccgctatcccggaaattcccacaagagggcatacggaatcatatggcaatttggcaaaacatcacgaatcacgacggggccttatcttgaaaacggaaaatattttgaagccgaaacttggtgagcgtaggtttggcataatgggcagttggccccgaacaagatggcgtctaggcctcaacggtttttgagttatggccatttttctgggattaaaggtcctaaatggaaatagagaaattatttttccacttcaggtcaaagtcaaggagcctccggtgtcaataaaagaagaaccagccatttatctattgtcatttaagagaaacggaacaatgacaaattggagatgttcacaaataggcgtttttttttttcaacggttacagatccagttgcggggtgttcatacgaatctttttaaagtgtgaggcggagctctgcgagatttctgtgattttctgaaataacacacacactaaaccctccgtaaataactcaATTCTTAACGttaagacttaaaactcaggattatgtaaaggcataccccaatcaggatatgagtttatttatagcttcctgtgccaaccagaagtgccttaaatggtgtcatagtggctgtttccaagggttaaaaaggtcagatcttttcaaaacttcatgtgtgattaggcaacccccataaactgtaagtcagtaatttctcccaacagatgtcaaagaaaagctctcacacacacacacacaccgcaaggatggagtgacaaagtgcagtgcttaaagacacagagagcaggcaatgcatgcattaccataatccctaggccgtgccgagttcaacgagctatcccgcttgaccgtagctcgctcggtctaagcgcaacgaccattagaaaagtaggcccaaaatgaagcctgccccacaatgtcatttgcttttgagtgacagtgagagaaccgttagggtgagaagaaaaattccaccacatgaatgttcctaaggtcctcccgatccgtgcaagcctaaccttgaccgtgtggcattaacccttaacagtaaaacagtgttttttgggTGTTTTTTgagttatgaatgccgtatgaacctgtcttcggtaccagtccatcaggccactatgaggtctacctgtgttgattctaagcttcctggaccaaccggaagtggttaaaatgcccctaaaagtgtatatccataccctgcctgcagtttgacagaCATCGTGCATTCaagcctgtgtaaatcagtcaattcttaacgaaAAGACTTAAAAcacaggattctgtaaaagcataccccaatgaggatatgtgttgatttatagcttcctgtgccaaccggaagtgccataattggtgtctcaggggctgtttcgaggggttaagaaagtctgatctttccaaaacttcatatgtgtgattaggcaacccccatgaactgtaaatcagtcatttttcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2664486 lncRNA downstream 10156 41748168 ~ 41748431 (-) True G2329984
TU2664469 lncRNA downstream 14282 41743882 ~ 41744305 (-) True G2329969
TU2664373 lncRNA downstream 179775 41578378 ~ 41578812 (-) True G2329876
TU2664228 lncRNA downstream 273516 41484866 ~ 41485071 (-) True G2329742
TU2664081 lncRNA downstream 427050 41331122 ~ 41331537 (-) True G2329608
TU2664509 lncRNA upstream 243 41765002 ~ 41765349 (-) True G2329998
TU2664511 lncRNA upstream 5129 41769888 ~ 41770104 (-) True G2330000
TU2664517 lncRNA upstream 19927 41784686 ~ 41785165 (-) True G2330006
TU2664523 lncRNA upstream 28700 41793459 ~ 41816996 (-) True G2330010
XR_005041294.1 mRNA downstream 11197 41746288 ~ 41747390 (-) True LOC110529149
XM_036970845.1 mRNA downstream 82899 41644321 ~ 41675688 (-) True nudcd1
XM_036970846.1 mRNA downstream 82900 41644320 ~ 41675687 (-) False nudcd1
LOC110487689 mRNA downstream 149207 41469563 ~ 41609380 (-) True LOC110487689
XM_021561997.2 mRNA downstream 313454 41418547 ~ 41445133 (-) False eppk1
TU2664134 other downstream 318718 41439535 ~ 41439869 (-) True eppk1
TU2663958 other downstream 501247 41253995 ~ 41257340 (-) True G2329495
TU2663811 other downstream 730636 41019276 ~ 41027951 (-) True usf2
TU2663244 other downstream 1109165 40648804 ~ 40649422 (-) True G2328836
TU2662679 other downstream 1549856 40208053 ~ 40208731 (-) True G2328315
TU2664510 other upstream 4009 41768768 ~ 41769560 (-) True G2329999

Expression Profile