RNA id: TU2680708


Basic Information

Item Value
RNA id TU2680708
length 1119
RNA type TUCP
GC content 0.57
exon number 2
gene id G2340951
representative True

Chromosome Information

Item Value
chromosome id NW_023493666.1
NCBI id JAAXML020000359.1
chromosome length 1258143
location 878809 ~ 929132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgacatacattgttctaacatgccagaggctgttcaccttggagacctgctgcggatatgggtacggcccggcgcgagatttacaccctctcccctggATTTTCAAGGGctagcgagagctcaccggacgccgcccgAACCGcaacgctttccagggcttgggcccctctctcggggcgaacccattccagggcgccctgcccttcacaaagaaaagagaactctccccggggctcccgccagcttctccgggatcggtcgcgttaccgcactggacgcctcgcggcgcccatctccgccactccggattcggggatctgaacccgactcccttttgatcgcccctcccttccgaacggcgttcgcccatctcttaggaccgactgacccatgttcaactgctgttcacatggaacccttctccacttcggccttcaaagttctcgtttgaatatttgctactaccaccaagatcttcacctaggcttccgtgctcaccgcggcggccctcctactcgtcgcggcatagccctcgaggctctcatTGCCAGTGACGCCCGgttatgggcccgacgctccagcgccatccattttcagggctacttgattcggcaggtgagttgttacacactccttagcggattccaacttccatggccaccgtcctgctgtttatatcgaccaacaccttttctggggtctgatgagcgtcagCATCgtgcgccttaacccggcgttcggttcatcccgcagagccagttctgcttaccaaaagtggcccactaggcgaaTCGCATTCCATGCCCGGCTCCAAgacagcgagccgggcttcttacccatttaaagtttgagaataggttgagatcgtttcggccccaagacctctaattattcgctttaccagataaaactgcaaGACTTTGAGCggcagctatcctgagggaaacttcggagggaaccagctactagatggtttgattagtctttcgcccctatacccaggtcggacgaccgatttgcacgtcaggaccgctacggacctccaccagagtttcctctggcttcgccctgcccaggcatagtacaccatctttcgggtcctccgagagagagaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2680636 lncRNA downstream 59183 811254 ~ 819626 (-) False G2340897
TU2680634 lncRNA downstream 59183 812636 ~ 819626 (-) False G2340897
TU2680635 lncRNA downstream 59183 812636 ~ 819626 (-) False G2340897
TU2680637 lncRNA downstream 59183 812636 ~ 819626 (-) True G2340897
TU2680650 lncRNA downstream 60995 810062 ~ 817814 (-) True G2340903
TU2680734 lncRNA upstream 4359 933491 ~ 935264 (-) True G2340974
TU2680773 lncRNA upstream 76791 1005923 ~ 1040396 (-) False G2341006
TU2680779 lncRNA upstream 79045 1008177 ~ 1013125 (-) False G2341006
TU2680778 lncRNA upstream 81521 1010653 ~ 1013125 (-) True G2341006
TU2680810 lncRNA upstream 129673 1058805 ~ 1115633 (-) True G2341021
XM_036972405.1 mRNA downstream 21254 854973 ~ 857555 (-) False LOC118947149
XM_036972407.1 mRNA downstream 21254 856362 ~ 857555 (-) True LOC118947149
XM_036972406.1 mRNA downstream 21380 854973 ~ 857429 (-) False LOC118947149
XR_005041789.1 mRNA downstream 27544 849208 ~ 851265 (-) True LOC118947146
XM_036972401.1 mRNA downstream 41528 829462 ~ 837281 (-) True LOC118947142
LOC110514453 mRNA upstream 9739 938871 ~ 948116 (-) True LOC110514453
trnat-ugu-120 mRNA upstream 76408 1005540 ~ 1005611 (-) True trnat-ugu-120
trnaa-ugc-263 mRNA upstream 77020 1006152 ~ 1006223 (-) True trnaa-ugc-263
trnat-ugu-121 mRNA upstream 78484 1007616 ~ 1007687 (-) True trnat-ugu-121
trnaa-ugc-264 mRNA upstream 79096 1008228 ~ 1008299 (-) True trnaa-ugc-264
TU2680652 other downstream 64154 806890 ~ 814655 (-) True G2340905
TU2679989 other downstream 762093 116167 ~ 116716 (-) True LOC110514508
TU2679952 other downstream 815671 62414 ~ 63138 (-) True G2340407
TU2680848 other upstream 229466 1158598 ~ 1164054 (-) True G2341053

Expression Profile