RNA id: TCONS_00005548


Basic Information

Item Value
RNA id TCONS_00005548
length 966
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_003027
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40848354 ~ 40939706 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCTCTCTGCTGGCCCGTGGCCCGGTTATGTGAGCGAATCACTGGACTAGAATAAAGACACTGAAGAGAGCAAAGCCTAAACCCGCCTTCCCTGGAGCTCCCATTTTCCCCAGTCTTTCCAAACTCTCGCCGGCTCCAGGTTCACATCCACACCCGCGCCCGCGCTCACTCATTCCCGGCATGAACTCCCCGTGGACCCGCGTGCTGGTGCTCATTTtttgccttttgacagtggataCAATCTATCAAACAGGTCCAGGAGAAAGTGATGAAGTTGACTACAAGGACCCGTGCAAAGCTGTTGCTTTTTTAGGGGACATCGCCTTGGATGAGGAGGACCTGCGCTTTCTTAAAGCCCACTATATGCACGCTACAGAAAATGAGTCTTCAGGAAGCTCTAAACCTGACTCGGTAAACAGATCCTCAGCTAATAGAAATGCAAAGGACGAGCCAGTGTTGGCAAATCAAAGCATCTTACGCAGAAGAAGAGCAGCCACCGCTAGACCTGAGAGAGTTTGGCCCAATGGCATAATACCCTACATTATTAGTGGCAACTTTACtgGCAGCCAGCGAGCCATTTTCAAGCAAGCCATGCGTCACTGGGAGAAACACACTTGCGTGACCTTTGTGGAGAGAAGTGTGGAGGAGAGCTACATCGTCTTTACCCTCCGCCCATGTGGGTGCTGTTCGTTTGTTGGCCGGAGAGGTGGAGGTCCACAGGCCATATCTATTGGGAAAAACTGTGACAAATTTGGGATCGTGGTGCATGAACTCGGACATGTCATTGGATTCTGGCACGAACACACACGACCTGACCGGGACGAACATGTTGATATATTTAGAGAAAACATCCAGCCAGGTCAGGAGTACAATTTCATAAAGATGGAGCCAGATGATGTGGACTCGCTCGGGGAGGTGTACGATTTCGACAGTATCATGCATTACGCCAGAAACACCTTTTCCAG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060818-2 Predicted to enable calcium ion binding activity; metalloendopeptidase activity; and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Is expressed in margin. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 13. Orthologous to human BMP1 (bone morphogenetic protein 1).

Ensembl:

ensembl_id ENSDART00000134295

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006123 lncRNA downstream 56206 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005779 lncRNA downstream 291348 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 414094 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 422666 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006122 lncRNA downstream 1823215 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005562 lncRNA upstream 428805 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006124 lncRNA upstream 1043606 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 1043606 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 1043606 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA upstream 1043606 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005544 mRNA downstream 86646 40821804 ~ 40826657 (-) True XLOC_003026
TCONS_00005542 mRNA downstream 94167 40787005 ~ 40819136 (-) False XLOC_003025
TCONS_00005543 mRNA downstream 94281 40787006 ~ 40819022 (-) True XLOC_003025
TCONS_00005541 mRNA downstream 121326 40786196 ~ 40791977 (-) False XLOC_003025
TCONS_00005539 mRNA downstream 295736 40616572 ~ 40617567 (-) True XLOC_003022
TCONS_00005549 mRNA upstream 12394 40951697 ~ 40968095 (-) False XLOC_003030
TCONS_00005550 mRNA upstream 14193 40953496 ~ 40964739 (-) True XLOC_003030
TCONS_00005551 mRNA upstream 121436 41060739 ~ 41156348 (-) False XLOC_003031
TCONS_00005552 mRNA upstream 191221 41130524 ~ 41157135 (-) True XLOC_003031
TCONS_00005555 mRNA upstream 339704 41279007 ~ 41302909 (-) False XLOC_003032
TCONS_00005547 other downstream 10066 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 171856 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 375256 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 392203 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 395705 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005570 other upstream 1030588 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 1172269 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 1972630 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 2053543 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 2596657 43535960 ~ 43536095 (-) True XLOC_003064

Expression Profile

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