RNA id: TCONS_00005565


Basic Information

Item Value
RNA id TCONS_00005565
length 2468
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_003036
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41624711 ~ 41664427 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAAAAACTCACCTGTAGTTGTGAAAAGCTTACTAGAGTGTTTTTTTTCTTGAGTCATCCTCTGGCACGTGTGGATTTAACACCACCACAGCCTGTGCCCTTTTCACCTGTGTTAATAAAACAGTTATGGGTGATTCGACTGGGAGTTACGGTTAAAGTTTGATGGCCATTAGAGTTAGACATTGAGAGGGTTTACAGCGTTGTCTCAGTCAGATAGAAGATCTTCAGACTTTGAGGAGGCCTGTGAAGTCTACAGGAAAATGGTGCAGAAGTCGACAGTTGCGGGTCTTGTTCTGCTGCTGCTGGCTGCCGTCGGGACGTTTCTGGCCGTTTTCTTTTCAGTGCAGGGTAAAAAGGCTTCGTCTGATCCAGAATCGGGCTTCTTCAAGGCAGCAGTGGCCACAGATGCTGGAACATGTTCAGAGATCGGCAGGGACGTCTTGAAGAAAGGAGGATCGGCTGTAGATTCTGCCATCGCTGCGCTGCTGTGTGCGGGACTGATGAATGCCCACAGCATGGGCATCGGAGGAGGCCTTTTCTTCACTATTTATGATGCCAAAACAGGAAAAGCTGAAACCATCAATGCTCGTGAGACAGCCCCTGCTAACGCCACCAGAGACATGTTTGGAAATAGTACAGAGCTTTCCCAGAAAGGTGGTTTGTCCATCGCTGTTCCTGGAGAGATTCGAGGATATGAAATGGCCCATAGACGGCATGGCAGACTTCCATGGAAAGAGCTGTTTTTACCCAGCATTAAACTGGCCAGAGATGGTTTCCCTGTCGGCCGCGCACTGGCCAGCGCCATCAGATCAAATCGAAATAACATACTGGAGGATAAGATGTTATGCTCTGTGTTCTGCAACTCCACCGGAAACATCCTCCAGGAAAACGACACCATCACCTTTACTAAACTGGCCGACACGTATGAGGCCATCGCAGAGCAGGGGCCTGAAGCCTTTTACAGCGGAGCCCTTGCAGAGAGCCTTGTCAGGGACATCCAAGATGCAGACGGGATCATAACTCTGGCGGACTTGAGAGATTATAGGGCTTTGCTGGATGAATATCCTCCTACTGCTTCTGTGGGTGAATTTACTATGGTGACACCAGACGCTCCGTCCAGCGGTCCAGTGCTTACACTCATGCTGAATATCCTCAGTGGTTATTCCTTAAGTCCAGACAGTGTCTCCTCCACTGAGAAGAAAATCCTCACTTATCATCGGGTAGTAGAGGCATTTCGTTTCGCCTATGCTAAGAGGAGCGTCTTGGGGGATCCGCAGTTCCTCAACATCTCTGACTTCATCCAGAACATCACCTCCAAAGGCTACGCTGACATGATCCGCCTCAAGATCACAGATAACAGCACGCAGCAGGAGAGCTACTACGAGCCCGAGTTTTACCTTCCCGAAAACTACGGTACATCACATGTGTCGGTGGTGGCGGAGGACGGCAGTGCGGTCGCCGCTACCAGCACCATCAATACATACTTTGGCTCAAAGTTGATGTCAAAGTCGACAGGTATTTTACTGAACAACGAGATGGACGACTTCAGCTCTCCGTTGATCACCAACAACTTTGGAGTTCCTCCTTCTCCAAACAACTTCATTGTCCCAAATAAAAGGCCCATGTCTTCAATGTGTCCTGCAATCCTGCTGGACAAAAACAATCAGGTTAAGATGGTGGTGGGAGCATCTGGAGGGACAAAGATCACCACAGCAGTGGCTCAGGTGGTATTAAACACTCTGTTCTTCCAATACGATCTGAAGAAAGCAATAGCAGAAGCAAGAGTTCACAATCAGCTCAGTCCAAACACCACGCAGGTGGAGCAGAGCTTTGACAAGGCTGTTTTGGAGGGTCTTGCTGAGAAGAATCATTTCACAGAAGTCTTCACTTCTATGGGCGCAGTGGTTCAGGCTGTAGCACGGTACAGTGAGGGTCTCAGCGCTGAGTCAGACCCCCGAAAGGGAGGATACGCAGCCGGATACTAACATCCAGATGTCCAGTTCAGCCGGAGGCAATGAAGACTCTGCTTTTAGACCCGgaggatgcttttttttttgactcCCATGCTGCTCTCAAACAACCAAGTGCCTCTATCAGAGATCCGACAGGCCAGTATGCATAAACTCTTGTGGTCTTAAGCTCTGCACACTCCACCTTTAGTGAATCTTCAGGGAAAACTTGATTTTGAATTAGTGTTGTGCAATATTTATTGTCTAGAATGCACGACCGAattttgtttgaatgttttaattaTGTGCGATCTGACTCTCACACTGTGAAAAAAGTccttaaataagcagttttctttattgtgtgattcatgtttttatttttttatttatttctgcttttcaaTTATATTATGTGACCTTGAAAAGTTGATAAAAATGACttgtattaacatttttaatagtttaaagcagtggttctcaaactattttcaccaagtaccacctcaaaaaaaaaa

Function

GO:

id name namespace
GO:0032355 response to estradiol biological_process
GO:0007283 spermatogenesis biological_process
GO:0050727 regulation of inflammatory response biological_process
GO:0006751 glutathione catabolic process biological_process
GO:0002682 regulation of immune system process biological_process
GO:0034612 response to tumor necrosis factor biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:0031179 peptide modification biological_process
GO:0005886 plasma membrane cellular_component
GO:0000048 peptidyltransferase activity molecular_function
GO:0036374 glutathione hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-13 Predicted to enable glutathione hydrolase activity and peptidyltransferase activity. Predicted to be involved in several processes, including peptide metabolic process; response to estradiol; and response to tumor necrosis factor. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in gamma-glutamyl transpeptidase deficiency. Orthologous to several human genes including GGT1 (gamma-glutamyltransferase 1).

Ensembl:

ensembl_id ENSDART00000150213

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005562 lncRNA downstream 256074 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006123 lncRNA downstream 767614 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005779 lncRNA downstream 1002756 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 1125502 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 1134074 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006124 lncRNA upstream 318482 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 318482 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 318482 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA upstream 318482 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005780 lncRNA upstream 318482 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00005564 mRNA downstream 174257 41409264 ~ 41450454 (-) True XLOC_003035
TCONS_00005563 mRNA downstream 174344 41409255 ~ 41450367 (-) False XLOC_003035
TCONS_00005561 mRNA downstream 224662 41362390 ~ 41400049 (-) False XLOC_003034
TCONS_00005560 mRNA downstream 227048 41362390 ~ 41397663 (-) False XLOC_003034
TCONS_00005559 mRNA downstream 272103 41352153 ~ 41352608 (-) True XLOC_003033
TCONS_00005566 mRNA upstream 161904 41826331 ~ 41907213 (-) False XLOC_003037
TCONS_00005567 mRNA upstream 165171 41829598 ~ 41906609 (-) True XLOC_003037
TCONS_00005568 mRNA upstream 262461 41926888 ~ 41940302 (-) True XLOC_003038
TCONS_00005569 mRNA upstream 305001 41969428 ~ 41980797 (-) False XLOC_003039
TCONS_00005574 mRNA upstream 362858 42027285 ~ 42039128 (-) False XLOC_003041
TCONS_00005547 other downstream 721474 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 883264 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 1086664 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 1103611 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 1107113 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005570 other upstream 305464 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 447145 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 1247506 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 1328419 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 1871533 43535960 ~ 43536095 (-) True XLOC_003064

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00522039_00535779.mRNA True 1993 mRNA 0.49 10 CI01000158 521745 ~ 535804 (-)